Os02g0134300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF701, zinc-binding putative family protein.
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Os02g0134300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF701, zinc-binding putative family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.31 | 0.478 | 10.3 | 3.78 | 0.625 | -1.87 | 1.43 | 6.66 | 0.682 | 18.4 | 999.3 | 1691 | -- | -- |
| 105.86 | 0.479 | 10.3 | 3.42 | 0.614 | -1.17 | 1.34 | -- | 0.691 | 18.4 | 997.4 | 2852 | -- | -- |
| 108.33 | 0.485 | 10.3 | 3.77 | 0.632 | -1.88 | -- | 6.78 | 0.687 | 18.5 | 999.3 | 1654 | -- | -- |
| 110.03 | 0.489 | 10.3 | 3.37 | 0.615 | -1.31 | -- | -- | 0.694 | 18.6 | 996.5 | 2749 | -- | -- |
| 129.07 | 0.529 | 10.3 | 3.76 | -- | -1.91 | -- | 7.02 | 0.674 | -- | 999.2 | 1664 | -- | -- |
| 116.51 | 0.506 | 10.3 | 3.4 | 0.628 | -- | 1.39 | -- | 0.732 | 18.4 | -- | -- | -- | -- |
| 121.18 | 0.516 | 10.3 | 3.38 | 0.635 | -- | -- | -- | 0.736 | 18.7 | -- | -- | -- | -- |
| 129.74 | 0.531 | 10.3 | 3.36 | -- | -1.32 | -- | -- | 0.678 | -- | 996.4 | 2641 | -- | -- |
| 399.21 | 0.931 | 10.4 | -- | 0.52 | -2.56 | -- | -- | 0.39 | 18.6 | 994.7 | 2765 | -- | -- |
| 142.23 | 0.557 | 10.3 | 3.36 | -- | -- | -- | -- | 0.724 | -- | -- | -- | -- | -- |
| 421.46 | 0.96 | 10.4 | -- | 0.596 | -- | -- | -- | 0.36 | 19 | -- | -- | -- | -- |
| 218.94 | 0.689 | 10.4 | -- | -- | -2.05 | -- | -- | -0.167 | -- | 993.8 | 46125 | -- | -- |
| 440.17 | 0.979 | 10.4 | -- | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.33 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 2 | 102.36 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 5 | 102.45 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 9 | 102.76 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 11 | 102.79 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 29 | 103.14 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 30 | 103.15 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 107 | 103.44 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 111 | 103.46 | atmosphere | 1000 | 1440 | < th | dose dependent | sin | 19 | NA |
| 166 | 103.63 | atmosphere | 1000 | 1440 | < th | dose independent | sin | 17 | NA |
| 212 | 103.75 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 287 | 103.91 | atmosphere | 1000 | 1440 | > th | dose independent | sin | 17 | NA |
| 327 | 103.98 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 526 | 104.33 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 557 | 104.37 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 571 | 104.39 | radiation | 40 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 579 | 104.40 | atmosphere | 1000 | 1440 | < th | dose dependent | no | NA | NA |
| 609 | 104.44 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 624 | 104.46 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 641 | 104.49 | radiation | 40 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 681 | 104.55 | atmosphere | 1000 | 1440 | < th | dose independent | no | NA | NA |
| 686 | 104.55 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 770 | 104.67 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 794 | 104.70 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 814 | 104.73 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 843 | 104.76 | atmosphere | 1000 | 1440 | > th | dose independent | no | NA | NA |