BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0134300 Os02g0134300|AK120292
         (105 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0134300  Protein of unknown function DUF701, zinc-bindi...   189   5e-49
Os07g0631100  Protein of unknown function DUF701, zinc-bindi...   137   2e-33
Os06g0156800                                                       96   5e-21

>Os02g0134300 Protein of unknown function DUF701, zinc-binding putative family
           protein
          Length = 105

 Score =  189 bits (479), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 92/105 (87%)

Query: 1   MGXXXXXXXXXXXXXMDKLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSV 60
           MG             MDKLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSV
Sbjct: 1   MGKRKSKAKPPPKKRMDKLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSV 60

Query: 61  NALTEPIDIYSEWIDECERVNNPEEDNANHYEDDNASRYRYDEEE 105
           NALTEPIDIYSEWIDECERVNNPEEDNANHYEDDNASRYRYDEEE
Sbjct: 61  NALTEPIDIYSEWIDECERVNNPEEDNANHYEDDNASRYRYDEEE 105



>Os07g0631100 Protein of unknown function DUF701, zinc-binding putative family
          protein
          Length = 89

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 70/88 (79%)

Query: 1  MGXXXXXXXXXXXXXMDKLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSV 60
          MG             MDKLDTVF CPFCNHGSSVECRID+KNLIGEASCRIC E FST+V
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 NALTEPIDIYSEWIDECERVNNPEEDNA 88
          NALTEPIDIYSEWIDECERVNN E+D+ 
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDG 88



>Os06g0156800 
          Length = 108

 Score = 96.3 bits (238), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 51/61 (83%)

Query: 18 KLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSVNALTEPIDIYSEWIDEC 77
          KL+T F CPFC+HG +VEC ID+K++I EASC +C   +ST+ +ALTEPID+YSEWID+C
Sbjct: 21 KLETAFSCPFCDHGGAVECSIDIKHMIAEASCFVCQARYSTTAHALTEPIDVYSEWIDQC 80

Query: 78 E 78
          E
Sbjct: 81 E 81



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,316,430
Number of extensions: 116452
Number of successful extensions: 353
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 3
Length of query: 105
Length of database: 17,035,801
Length adjustment: 73
Effective length of query: 32
Effective length of database: 13,224,179
Effective search space: 423173728
Effective search space used: 423173728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)