BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0614600 Os07g0614600|J090095G09
         (74 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0614600  Lung seven transmembrane receptor family protein    127   2e-30
Os09g0439700  Lung seven transmembrane receptor family protein     75   1e-14
Os11g0546100  Lung seven transmembrane receptor family protein     68   2e-12

>Os07g0614600 Lung seven transmembrane receptor family protein
          Length = 74

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MYEKNSKIKIQVHFKTTDEHNERWRVAWVIPAVWELISFFLLCTICILWTPSQNSMRYM 59
          MYEKNSKIKIQVHFKTTDEHNERWRVAWVIPAVWELISFFLLCTICILWTPSQNSMRYM
Sbjct: 1  MYEKNSKIKIQVHFKTTDEHNERWRVAWVIPAVWELISFFLLCTICILWTPSQNSMRYM 59



>Os09g0439700 Lung seven transmembrane receptor family protein
          Length = 532

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 8   IKIQVHFKTTDEHNERWRVAWVIPAVWELISFFLLCTICILWTPSQNSMRY 58
           I  +++FK+TD  NERW+ AW+IPA W ++SF LLC I  LW PSQNSMR+
Sbjct: 425 IGYEIYFKSTDVFNERWQYAWIIPAFWHVLSFSLLCVISYLWAPSQNSMRF 475



>Os11g0546100 Lung seven transmembrane receptor family protein
          Length = 514

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 37/51 (72%)

Query: 8   IKIQVHFKTTDEHNERWRVAWVIPAVWELISFFLLCTICILWTPSQNSMRY 58
           I  +V+FK TD  +ERW+ AW+I A W++++F LL  IC LW PSQ+S RY
Sbjct: 410 IGYEVYFKATDPFSERWQSAWIITAFWDVLAFVLLLVICYLWAPSQSSQRY 460



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.134    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,196,146
Number of extensions: 63092
Number of successful extensions: 172
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 3
Length of query: 74
Length of database: 17,035,801
Length adjustment: 45
Effective length of query: 29
Effective length of database: 14,686,171
Effective search space: 425898959
Effective search space used: 425898959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)