Os09g0439700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lung seven transmembrane receptor family protein.
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Os09g0439700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lung seven transmembrane receptor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.82 | 0.325 | 9.39 | 0.124 | 0.695 | -1.28 | -0.12 | 2.31 | -0.102 | 21.8 | 30.7 | 126 | -- | -- |
| 53.03 | 0.339 | 9.35 | 0.513 | 0.657 | -1.28 | 0.219 | -- | -0.0239 | 22 | 29.59 | 174 | -- | -- |
| 47.83 | 0.322 | 9.39 | 0.119 | 0.692 | -1.29 | -- | 2.22 | -0.11 | 21.9 | 30.3 | 131 | -- | -- |
| 53.18 | 0.34 | 9.35 | 0.501 | 0.648 | -1.29 | -- | -- | -0.0256 | 21.9 | 29.58 | 189 | -- | -- |
| 59.56 | 0.359 | 9.37 | 0.0563 | -- | -1.7 | -- | 2.21 | -0.119 | -- | 37.81 | 539 | -- | -- |
| 74.78 | 0.405 | 9.29 | 0.812 | 0.748 | -- | -0.257 | -- | 0.234 | 19.6 | -- | -- | -- | -- |
| 74.95 | 0.405 | 9.29 | 0.817 | 0.747 | -- | -- | -- | 0.233 | 19.7 | -- | -- | -- | -- |
| 62.4 | 0.368 | 9.35 | 0.393 | -- | -1.66 | -- | -- | -0.0848 | -- | 31.08 | 592 | -- | -- |
| 58.98 | 0.358 | 9.37 | -- | 0.621 | -1.49 | -- | -- | -0.113 | 22.2 | 29.5 | 211 | -- | -- |
| 105.02 | 0.479 | 9.27 | 0.808 | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
| 92.56 | 0.45 | 9.31 | -- | 0.74 | -- | -- | -- | 0.142 | 19.8 | -- | -- | -- | -- |
| 66.19 | 0.379 | 9.35 | -- | -- | -1.76 | -- | -- | -0.14 | -- | 30.57 | 591 | -- | -- |
| 122.24 | 0.516 | 9.29 | -- | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 3 | 46.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 6 | 46.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 19 | 47.26 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 24 | 47.34 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 32 | 47.41 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 33 | 47.42 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 37 | 47.43 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 64 | 47.49 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 81 | 47.53 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 119 | 47.59 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 125 | 47.60 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 169 | 47.64 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 185 | 47.67 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 246 | 47.75 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 287 | 47.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 18 |
| 294 | 47.83 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 299 | 47.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 21 |
| 300 | 47.84 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 304 | 47.85 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 308 | 47.85 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 314 | 47.86 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 330 | 47.89 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |
| 338 | 47.90 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 347 | 47.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 358 | 47.93 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 369 | 47.95 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 489 | 48.12 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 504 | 48.15 | wind | 5 | 43200 | < th | dose independent | sin | 16 | NA |
| 554 | 48.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 582 | 48.28 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 593 | 48.30 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 605 | 48.32 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 616 | 48.33 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 655 | 48.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 656 | 48.39 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 670 | 48.40 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 671 | 48.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 690 | 48.43 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 691 | 48.43 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 702 | 48.45 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 726 | 48.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 741 | 48.51 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 752 | 48.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 756 | 48.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 765 | 48.54 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 11 |
| 789 | 48.56 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 872 | 48.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 883 | 48.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 884 | 48.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 961 | 48.75 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 994 | 48.78 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 8 |