BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0607700 Os07g0607700|AK069186
         (299 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0607700  Di-trans-poly-cis-decaprenylcistransferase fam...   625   e-179
Os06g0167400  Di-trans-poly-cis-decaprenylcistransferase fam...   589   e-169
Os01g0857200  Di-trans-poly-cis-decaprenylcistransferase fam...   118   5e-27

>Os07g0607700 Di-trans-poly-cis-decaprenylcistransferase family protein
          Length = 299

 Score =  625 bits (1612), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 1   MLGSLISYSPSVNPKTENPDELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR 60
           MLGSLISYSPSVNPKTENPDELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR
Sbjct: 1   MLGSLISYSPSVNPKTENPDELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR 60

Query: 61  RYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELM 120
           RYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELM
Sbjct: 61  RYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELM 120

Query: 121 EEKINELLENRNVINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYN 180
           EEKINELLENRNVINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYN
Sbjct: 121 EEKINELLENRNVINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYN 180

Query: 181 STSEIVIAVNKVCAERRDILQREDVDSVANNGVHSDISVADLDHHMYSAGCPDPDIVIRT 240
           STSEIVIAVNKVCAERRDILQREDVDSVANNGVHSDISVADLDHHMYSAGCPDPDIVIRT
Sbjct: 181 STSEIVIAVNKVCAERRDILQREDVDSVANNGVHSDISVADLDHHMYSAGCPDPDIVIRT 240

Query: 241 SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPYIEQSRNLAKKQL 299
           SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPYIEQSRNLAKKQL
Sbjct: 241 SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPYIEQSRNLAKKQL 299



>Os06g0167400 Di-trans-poly-cis-decaprenylcistransferase family protein
          Length = 299

 Score =  589 bits (1518), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/299 (94%), Positives = 288/299 (96%)

Query: 1   MLGSLISYSPSVNPKTENPDELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR 60
           MLGSL+SYSPSV+ KTEN DELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR
Sbjct: 1   MLGSLMSYSPSVDSKTENTDELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR 60

Query: 61  RYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELM 120
           RYAKFRSIQEGSGHR+GFSALIASLLYCYEMGVKYITVYAFSIDNFKRD TEVKSLMELM
Sbjct: 61  RYAKFRSIQEGSGHRVGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDPTEVKSLMELM 120

Query: 121 EEKINELLENRNVINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYN 180
           EEKINELLENRNVINKVNCKINFWG LDMLS+ VRVAAEKLM +TAEN GLVFSVCMPYN
Sbjct: 121 EEKINELLENRNVINKVNCKINFWGNLDMLSKSVRVAAEKLMATTAENTGLVFSVCMPYN 180

Query: 181 STSEIVIAVNKVCAERRDILQREDVDSVANNGVHSDISVADLDHHMYSAGCPDPDIVIRT 240
           STSEIV AVNKVCAERRDILQRED DSVANNGV+SDISVADLD HMYSAGCPDPDIVIRT
Sbjct: 181 STSEIVNAVNKVCAERRDILQREDADSVANNGVYSDISVADLDRHMYSAGCPDPDIVIRT 240

Query: 241 SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPYIEQSRNLAKKQL 299
           SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHP IEQSRNLAKKQL
Sbjct: 241 SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPSIEQSRNLAKKQL 299



>Os01g0857200 Di-trans-poly-cis-decaprenylcistransferase family protein
          Length = 295

 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 14/257 (5%)

Query: 26  GVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASL 85
           G   + ++ +  C+ A      +P+H+A +MDGN R+A+ R +   +GH  G  AL  ++
Sbjct: 42  GAAPAAESLLPGCLRA----ESLPRHVAVVMDGNARWARARGLPSAAGHEAGRRALEETV 97

Query: 86  LYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKINELLENRNVINKVNCKINFWG 145
                 G++ +T +AFS +N+ R   EV  LM L E  I++ +       +   ++   G
Sbjct: 98  RLSRAWGIRALTAFAFSNENWSRPKVEVDFLMRLFERVIHDSVAE---FLREGIRLRVIG 154

Query: 146 KLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAERRDILQREDV 205
               L   ++  A +   +T  N  L  ++ + Y+   +IV A  K+        Q+   
Sbjct: 155 DSSRLPVSLQKIAREAEETTRNNSQLDLTLAISYSGRRDIVQACRKLA-------QKVQS 207

Query: 206 DSVANNGVHSDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPL 265
            ++A   +   +   +L+    +   P PD++IRTSGE RLSNFLLWQ+ +S L   + L
Sbjct: 208 KALAAEDIDEALFADELETSCAADEFPYPDLLIRTSGELRLSNFLLWQSAYSELFFTNTL 267

Query: 266 WPEFSFKHLVWAILQYQ 282
           WP+F     + A+  +Q
Sbjct: 268 WPDFGEADYLEALCSFQ 284



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,587,983
Number of extensions: 381118
Number of successful extensions: 882
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 3
Length of query: 299
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 199
Effective length of database: 11,814,401
Effective search space: 2351065799
Effective search space used: 2351065799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)