Os07g0607700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Di-trans-poly-cis-decaprenylcistransferase family protein.
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Os07g0607700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Di-trans-poly-cis-decaprenylcistransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.59 | 0.276 | 11.1 | -0.0496 | 0.893 | -0.0107 | 0.473 | 5.45 | -0.144 | 7.12 | 29.92 | 1386 | -- | -- |
| 36.75 | 0.282 | 11.2 | -1.03 | 0.915 | 0.732 | 0.678 | -- | -0.147 | 6.91 | 30.77 | 1693 | -- | -- |
| 35.15 | 0.276 | 11.1 | -0.0397 | 0.898 | -0.00993 | -- | 5.4 | -0.146 | 7.01 | 29.88 | 1411 | -- | -- |
| 36.47 | 0.281 | 11.2 | -1.06 | 0.931 | 0.667 | -- | -- | -0.218 | 7 | 28.02 | 1319 | -- | -- |
| 77.2 | 0.409 | 11.1 | 0.0385 | -- | -0.0243 | -- | 5.72 | -0.103 | -- | 29.52 | 1415 | -- | -- |
| 54.82 | 0.347 | 11.3 | -0.865 | 0.927 | -- | 0.476 | -- | -0.273 | 6.8 | -- | -- | -- | -- |
| 55.38 | 0.349 | 11.3 | -0.858 | 0.929 | -- | -- | -- | -0.275 | 6.73 | -- | -- | -- | -- |
| 79.58 | 0.415 | 11.3 | -1.06 | -- | 0.676 | -- | -- | -0.254 | -- | 27.17 | 1355 | -- | -- |
| 63.54 | 0.371 | 11.2 | -- | 0.91 | 0.442 | -- | -- | -0.0629 | 7 | 29.69 | 1310 | -- | -- |
| 100.49 | 0.468 | 11.3 | -0.836 | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
| 74.76 | 0.404 | 11.2 | -- | 0.919 | -- | -- | -- | -0.179 | 6.78 | -- | -- | -- | -- |
| 106.51 | 0.481 | 11.2 | -- | -- | 0.488 | -- | -- | -0.0482 | -- | 30.02 | 1310 | -- | -- |
| 118.94 | 0.509 | 11.3 | -- | -- | -- | -- | -- | -0.163 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 3 | 34.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 4 | 34.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 5 | 34.55 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 53 | 34.59 | temperature | 30 | 1440 | > th | dose dependent | sin | 18 | NA |
| 60 | 34.60 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 81 | 34.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 84 | 34.63 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 178 | 34.64 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 188 | 34.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 208 | 34.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 210 | 34.69 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 211 | 34.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 231 | 34.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 282 | 34.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 284 | 34.81 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 308 | 34.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 322 | 34.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 325 | 34.95 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 330 | 34.98 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 366 | 35.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 393 | 35.08 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 407 | 35.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 410 | 35.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 432 | 35.22 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 433 | 35.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 439 | 35.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 542 | 35.48 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 546 | 35.50 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 638 | 35.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 646 | 35.66 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 648 | 35.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 766 | 35.70 | temperature | 30 | 1440 | > th | dose independent | sin | 2 | NA |
| 771 | 35.71 | temperature | 30 | 1440 | > th | dose independent | sin | 0 | NA |
| 781 | 35.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 794 | 35.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 797 | 35.77 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 798 | 35.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 842 | 35.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 849 | 35.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 852 | 35.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 904 | 35.80 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 950 | 35.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 12 |