BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0606500 Os07g0606500|AK070274
         (120 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0606500  Similar to ATP-dependent RNA helicase, eIF-4A ...   251   7e-68
Os02g0111900  DEAD/DEAH box helicase, N-terminal domain cont...   194   1e-50

>Os07g0606500 Similar to ATP-dependent RNA helicase, eIF-4A family
          Length = 120

 Score =  251 bits (641), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   KNALHTDIDVNIYDGDTPREDRTWIRDNARLLITNPDMLHMSILPCHGQFQRILSNLRYI 60
           KNALHTDIDVNIYDGDTPREDRTWIRDNARLLITNPDMLHMSILPCHGQFQRILSNLRYI
Sbjct: 1   KNALHTDIDVNIYDGDTPREDRTWIRDNARLLITNPDMLHMSILPCHGQFQRILSNLRYI 60

Query: 61  VIDEAHSYKGAFGCHTALILRRLKRICSNIYGSHPTFIFCTATSANPREHVMVGLIFSLC 120
           VIDEAHSYKGAFGCHTALILRRLKRICSNIYGSHPTFIFCTATSANPREHVMVGLIFSLC
Sbjct: 61  VIDEAHSYKGAFGCHTALILRRLKRICSNIYGSHPTFIFCTATSANPREHVMVGLIFSLC 120



>Os02g0111900 DEAD/DEAH box helicase, N-terminal domain containing protein
          Length = 927

 Score =  194 bits (492), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 99/112 (88%)

Query: 1   KNALHTDIDVNIYDGDTPREDRTWIRDNARLLITNPDMLHMSILPCHGQFQRILSNLRYI 60
           K A  +D DV+IYDGDT  +DRT IR+ ARLLITNPDMLHMSILPCH QF+R+L NL+YI
Sbjct: 256 KPAFRSDFDVSIYDGDTAMKDRTRIRNTARLLITNPDMLHMSILPCHAQFKRVLFNLKYI 315

Query: 61  VIDEAHSYKGAFGCHTALILRRLKRICSNIYGSHPTFIFCTATSANPREHVM 112
           VIDEAHSYKGAFGCH ALILRRLKRICS +YGS+PTFIFCTAT ANPREHVM
Sbjct: 316 VIDEAHSYKGAFGCHAALILRRLKRICSYVYGSNPTFIFCTATLANPREHVM 367



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,355,069
Number of extensions: 159805
Number of successful extensions: 339
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 2
Length of query: 120
Length of database: 17,035,801
Length adjustment: 86
Effective length of query: 34
Effective length of database: 12,545,397
Effective search space: 426543498
Effective search space used: 426543498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)