Os02g0111900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os02g0111900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.61 | 0.698 | 3.06 | -0.599 | 0.203 | 2.86 | -0.606 | -13.1 | 0.0225 | 17.6 | 0.94 | 23 | 4.35 | 6.3 |
| 223.3 | 0.696 | 3.03 | -0.226 | 0.206 | 2.94 | -0.31 | -- | 0.00743 | 17.3 | 0.8849 | 13 | 4.84 | 6.78 |
| 221.21 | 0.693 | 3.06 | -0.575 | 0.21 | 2.84 | -- | -12.3 | 0.0215 | 16.6 | 0.9436 | 23 | 4.35 | 5.6 |
| 223.51 | 0.696 | 3.03 | -0.223 | 0.211 | 2.98 | -- | -- | 0.00976 | 17.1 | 0.8615 | 14 | 4.84 | 6.79 |
| 223.44 | 0.696 | 3.06 | -0.583 | -- | 2.72 | -- | -12.6 | 0.0124 | -- | 0.9474 | 23 | 4.34 | 6.3 |
| 254.86 | 0.748 | 3.03 | -0.207 | 0.0378 | -- | 0.59 | -- | -0.0443 | 6.62 | -- | -- | -- | -- |
| 255.53 | 0.749 | 3.03 | -0.196 | 0.0684 | -- | -- | -- | -0.045 | 10.4 | -- | -- | -- | -- |
| 225.57 | 0.7 | 3.03 | -0.231 | -- | 2.76 | -- | -- | -0.00156 | -- | 0.8611 | 13 | 4.84 | 6.9 |
| 224.86 | 0.698 | 3.02 | -- | 0.208 | 2.94 | -- | -- | 0.0315 | 17.1 | 0.835 | 13 | 4.85 | 6.75 |
| 255.82 | 0.747 | 3.04 | -0.197 | -- | -- | -- | -- | -0.0452 | -- | -- | -- | -- | -- |
| 256.54 | 0.749 | 3.03 | -- | 0.0696 | -- | -- | -- | -0.0232 | 10.6 | -- | -- | -- | -- |
| 226.97 | 0.702 | 3.02 | -- | -- | 2.74 | -- | -- | 0.0237 | -- | 0.8351 | 13 | 4.85 | 6.9 |
| 256.84 | 0.748 | 3.03 | -- | -- | -- | -- | -- | -0.0234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 222.40 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 6 |
| 5 | 223.91 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 6 |
| 6 | 223.93 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 2 |
| 11 | 225.19 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 2 |
| 103 | 231.40 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 104 | 231.40 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 130 | 232.55 | temperature | 25.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 153 | 233.41 | wind | 1.0 | 30 | < th | dose dependent | sin | 0 | NA |
| 165 | 233.95 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 7 | 7 |
| 173 | 233.95 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 7 | 7 |
| 181 | 233.99 | humidity | 90.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 189 | 233.99 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 198 | 234.02 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 200 | 234.04 | humidity | 90.0 | 90 | > th | dose independent | rect. | 13 | 1 |
| 211 | 234.06 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 217 | 234.06 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 299 | 235.20 | wind | 1.0 | 30 | < th | dose independent | sin | 1 | NA |
| 303 | 235.46 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 322 | 235.92 | humidity | 80.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 363 | 236.83 | wind | 1.0 | 30 | > th | dose independent | sin | 0 | NA |
| 405 | 237.89 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 531 | 239.21 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 533 | 239.21 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 540 | 239.31 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 544 | 239.33 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 548 | 239.42 | wind | 1.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 553 | 239.46 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 572 | 239.74 | wind | 1.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 661 | 240.59 | temperature | 25.0 | 10 | > th | dose independent | rect. | 23 | 1 |
| 672 | 240.86 | wind | 1.0 | 30 | < th | dose dependent | rect. | 9 | 22 |
| 726 | 241.55 | wind | 1.0 | 30 | < th | dose dependent | rect. | 23 | 13 |
| 740 | 241.58 | wind | 1.0 | 30 | > th | dose independent | rect. | 1 | 11 |
| 745 | 241.62 | wind | 1.0 | 30 | < th | dose dependent | rect. | 23 | 11 |
| 787 | 241.77 | wind | 1.0 | 30 | < th | dose dependent | rect. | 22 | 9 |
| 872 | 242.00 | wind | 1.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 875 | 242.01 | wind | 1.0 | 30 | < th | dose dependent | no | NA | NA |
| 900 | 242.09 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 936 | 242.25 | wind | 1.0 | 30 | < th | dose dependent | rect. | 11 | 20 |
| 939 | 242.26 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 16 |