Os07g0606500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP-dependent RNA helicase, eIF-4A family.
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Os07g0606500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP-dependent RNA helicase, eIF-4A family.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.57 | 0.476 | 7.35 | -0.353 | 0.404 | 0.673 | 0.469 | -0.0672 | 0.149 | 15.8 | 0.5566 | 36 | -- | -- |
| 101.72 | 0.47 | 7.35 | -0.322 | 0.437 | 0.691 | 0.702 | -- | 0.132 | 15.6 | 0.1665 | 50 | -- | -- |
| 102.17 | 0.471 | 7.35 | -0.316 | 0.453 | 0.702 | -- | -0.253 | 0.15 | 15.8 | 0.17 | 53 | -- | -- |
| 102.41 | 0.471 | 7.35 | -0.324 | 0.468 | 0.709 | -- | -- | 0.168 | 15.7 | 0.17 | 57 | -- | -- |
| 110.01 | 0.489 | 7.34 | -0.391 | -- | 0.545 | -- | -0.255 | 0.137 | -- | 0.1699 | 42 | -- | -- |
| 113.42 | 0.499 | 7.36 | -0.41 | 0.664 | -- | -0.0661 | -- | 0.14 | 21.8 | -- | -- | -- | -- |
| 113.44 | 0.499 | 7.36 | -0.407 | 0.664 | -- | -- | -- | 0.14 | 21.8 | -- | -- | -- | -- |
| 109.52 | 0.487 | 7.34 | -0.358 | -- | 0.53 | -- | -- | 0.143 | -- | 0.17 | 25 | -- | -- |
| 105.48 | 0.478 | 7.35 | -- | 0.486 | 0.723 | -- | -- | 0.172 | 15.6 | 0.17 | 60 | -- | -- |
| 139.8 | 0.552 | 7.35 | -0.401 | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
| 117.82 | 0.508 | 7.35 | -- | 0.663 | -- | -- | -- | 0.185 | 21.8 | -- | -- | -- | -- |
| 112.91 | 0.495 | 7.34 | -- | -- | 0.532 | -- | -- | 0.168 | -- | 0.2011 | 19 | -- | -- |
| 144.04 | 0.56 | 7.34 | -- | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.04 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 4 | 95.59 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 5 | 95.95 | radiation | 1.0 | 30 | < th | dose dependent | sin | 9 | NA |
| 9 | 96.28 | radiation | 1.0 | 30 | < th | dose independent | sin | 9 | NA |
| 13 | 96.46 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 16 | 96.63 | radiation | 1.0 | 10 | > th | dose independent | sin | 9 | NA |
| 32 | 97.15 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 64 | 97.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 72 | 97.89 | radiation | 1.0 | 30 | > th | dose independent | rect. | 16 | 17 |
| 77 | 98.02 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 80 | 98.11 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 99 | 98.58 | radiation | 1.0 | 10 | > th | dose independent | rect. | 16 | 20 |
| 100 | 98.59 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 102 | 98.60 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 104 | 98.61 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 105 | 98.61 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 121 | 98.78 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 127 | 98.84 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 133 | 98.92 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 135 | 98.94 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 22 |
| 143 | 99.07 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 144 | 99.10 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 149 | 99.14 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 158 | 99.24 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 160 | 99.26 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 162 | 99.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 183 | 99.37 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 4 |
| 184 | 99.37 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 192 | 99.44 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 194 | 99.44 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 195 | 99.44 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 197 | 99.44 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 198 | 99.44 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 214 | 99.57 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 220 | 99.70 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 261 | 99.84 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 21 |
| 263 | 99.84 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 19 |
| 265 | 99.86 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 7 |
| 268 | 99.86 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 20 |
| 284 | 99.99 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 7 |
| 318 | 100.12 | humidity | 90.0 | 90 | < th | dose independent | rect. | 9 | 7 |
| 319 | 100.13 | radiation | 1.0 | 10 | < th | dose independent | rect. | 19 | 12 |
| 325 | 100.16 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 9 | 6 |
| 332 | 100.20 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 345 | 100.26 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 12 |
| 348 | 100.28 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 19 |
| 355 | 100.30 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 20 |
| 356 | 100.30 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 368 | 100.36 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 374 | 100.36 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 376 | 100.37 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 380 | 100.39 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 383 | 100.40 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 391 | 100.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 397 | 100.46 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 400 | 100.47 | radiation | 1.0 | 10 | < th | dose independent | rect. | 21 | 10 |
| 405 | 100.48 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 19 |
| 406 | 100.48 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 17 |
| 412 | 100.50 | radiation | 30.0 | 90 | < th | dose independent | rect. | 15 | 18 |
| 434 | 100.57 | radiation | 1.0 | 10 | < th | dose independent | rect. | 21 | 17 |
| 488 | 100.72 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 14 |
| 497 | 100.75 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 525 | 100.84 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 537 | 100.86 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 547 | 100.87 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 10 |
| 574 | 100.92 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 607 | 100.98 | wind | 9.0 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 628 | 101.02 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 632 | 101.03 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 636 | 101.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 5 |
| 639 | 101.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 645 | 101.05 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 648 | 101.05 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 650 | 101.06 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 19 | 10 |
| 703 | 101.18 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 4 |
| 719 | 101.20 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 6 |
| 723 | 101.20 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 760 | 101.26 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 16 | 17 |
| 792 | 101.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 1 |
| 795 | 101.32 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 16 | 17 |
| 796 | 101.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 802 | 101.32 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 16 | 17 |
| 803 | 101.33 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 4 |
| 805 | 101.33 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 812 | 101.35 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 4 |
| 818 | 101.36 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 16 | 17 |
| 825 | 101.37 | temperature | 10.0 | 90 | > th | dose independent | rect. | 15 | 18 |
| 830 | 101.37 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 6 |
| 835 | 101.40 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 857 | 101.41 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 863 | 101.43 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 6 |
| 874 | 101.46 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 876 | 101.46 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 877 | 101.46 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 880 | 101.46 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 881 | 101.46 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 882 | 101.46 | radiation | 20.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 891 | 101.47 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 895 | 101.48 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 898 | 101.48 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 904 | 101.49 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 5 |
| 906 | 101.50 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 928 | 101.53 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 934 | 101.53 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 7 |
| 936 | 101.53 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 938 | 101.53 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 951 | 101.56 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 977 | 101.60 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 17 |
| 992 | 101.61 | wind | 9.0 | 90 | < th | dose independent | rect. | 15 | 18 |