BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0606500 Os07g0606500|AK070274
         (120 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08110.1  | chr5:2594854-2600114 REVERSE LENGTH=1142           157   8e-40

>AT5G08110.1 | chr5:2594854-2600114 REVERSE LENGTH=1142
          Length = 1141

 Score =  157 bits (398), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 80/111 (72%), Positives = 92/111 (82%), Gaps = 1/111 (0%)

Query: 3   ALHTDIDVNIYDGDTPREDRTWIRDNARLLITNPDMLHMSILPCHG-QFQRILSNLRYIV 61
                I++ +YDGDTP +DRT +R NARLLITNPDMLH+SIL  H  QF RILSNLRYIV
Sbjct: 464 GFEASINMGVYDGDTPYKDRTRLRSNARLLITNPDMLHISILRRHKEQFSRILSNLRYIV 523

Query: 62  IDEAHSYKGAFGCHTALILRRLKRICSNIYGSHPTFIFCTATSANPREHVM 112
           IDEAH YKG FGCH ALILRRL+R+CS++YG +P+FIFCTATSANPREH M
Sbjct: 524 IDEAHIYKGPFGCHMALILRRLRRLCSHVYGVNPSFIFCTATSANPREHCM 574



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,782,076
Number of extensions: 103426
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)