BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0603300 Os07g0603300|AK066770
(940 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0603300 Conserved hypothetical protein 1672 0.0
Os03g0418700 Conserved hypothetical protein 730 0.0
Os07g0109400 Conserved hypothetical protein 131 2e-30
>Os07g0603300 Conserved hypothetical protein
Length = 940
Score = 1672 bits (4330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 828/940 (88%), Positives = 828/940 (88%)
Query: 1 MPPARVXXXXXXXXXXXDEAPELERQMGCMAGIFQIFDXXXXXXXXXXXXXXXXXXXXXX 60
MPPARV DEAPELERQMGCMAGIFQIFD
Sbjct: 1 MPPARVLGGGGGGGGLGDEAPELERQMGCMAGIFQIFDRRQRLLTARRRRPPPKMLPPGP 60
Query: 61 GHTLPRXXXXXXXXXXXXXKIVLEKTFSKSMTENXXXXXXXXXXXXXXXXXXXXXXLDGN 120
GHTLPR KIVLEKTFSKSMTEN LDGN
Sbjct: 61 GHTLPRSSSNVAAQSSSTSKIVLEKTFSKSMTENSSLSIESSRASCSSSSCSSFSSLDGN 120
Query: 121 KSIQQELPYINEQLFVQRPLKSSPSLKDPVMDTRSGQSNIGFRDIVKDSINRDTGGLTVK 180
KSIQQELPYINEQLFVQRPLKSSPSLKDPVMDTRSGQSNIGFRDIVKDSINRDTGGLTVK
Sbjct: 121 KSIQQELPYINEQLFVQRPLKSSPSLKDPVMDTRSGQSNIGFRDIVKDSINRDTGGLTVK 180
Query: 181 TSVKDARRNGQYKDSPRPLLLSKSMDGTYVIGIDRSTKVPANAVESSRRFPEQSRFSCDD 240
TSVKDARRNGQYKDSPRPLLLSKSMDGTYVIGIDRSTKVPANAVESSRRFPEQSRFSCDD
Sbjct: 181 TSVKDARRNGQYKDSPRPLLLSKSMDGTYVIGIDRSTKVPANAVESSRRFPEQSRFSCDD 240
Query: 241 RRLLRPVEAQENKKPSTRLKELPRLSLDSRKETLSSSSRQKTFSYRRTDDSLMDALRPQD 300
RRLLRPVEAQENKKPSTRLKELPRLSLDSRKETLSSSSRQKTFSYRRTDDSLMDALRPQD
Sbjct: 241 RRLLRPVEAQENKKPSTRLKELPRLSLDSRKETLSSSSRQKTFSYRRTDDSLMDALRPQD 300
Query: 301 SPGHRRASSVIAKLMGLEEAPNATGVLTVDSYEPERSPRPAEDTQKEHPVPSPRRFCQDP 360
SPGHRRASSVIAKLMGLEEAPNATGVLTVDSYEPERSPRPAEDTQKEHPVPSPRRFCQDP
Sbjct: 301 SPGHRRASSVIAKLMGLEEAPNATGVLTVDSYEPERSPRPAEDTQKEHPVPSPRRFCQDP 360
Query: 361 RESLPKDESPAMKTKPSPRILTESAPWRQQEKIATSSKASQCRDAEVRPRTASLYAYIER 420
RESLPKDESPAMKTKPSPRILTESAPWRQQEKIATSSKASQCRDAEVRPRTASLYAYIER
Sbjct: 361 RESLPKDESPAMKTKPSPRILTESAPWRQQEKIATSSKASQCRDAEVRPRTASLYAYIER 420
Query: 421 RGGGLEFLECNKDFRALRILEALHAKDAKRQNDGNGALTVAAQQAGDALNTSSRHFQPPI 480
RGGGLEFLECNKDFRALRILEALHAKDAKRQNDGNGALTVAAQQAGDALNTSSRHFQPPI
Sbjct: 421 RGGGLEFLECNKDFRALRILEALHAKDAKRQNDGNGALTVAAQQAGDALNTSSRHFQPPI 480
Query: 481 VVMKPARSTEKQPGVSLASVDPLAGFRNLRKLQARDAPCIGEHETSTNEKVHSRISRAQS 540
VVMKPARSTEKQPGVSLASVDPLAGFRNLRKLQARDAPCIGEHETSTNEKVHSRISRAQS
Sbjct: 481 VVMKPARSTEKQPGVSLASVDPLAGFRNLRKLQARDAPCIGEHETSTNEKVHSRISRAQS 540
Query: 541 KSDEXXXXXXXXXXXXXXXXXXVQRKXXXXXXXXXXXXXXXXXXXXXXXXXXGGRTRTKP 600
KSDE VQRK GGRTRTKP
Sbjct: 541 KSDEPASRASSPRPTGSSSPRTVQRKAESERRSRPPVSPKSPSKKSSEAASPGGRTRTKP 600
Query: 601 SQGKNHRDNEVSKSPRSRISMVKEIDISIMDFQKPLASTPSHKGTPSVLASDQKINSLEN 660
SQGKNHRDNEVSKSPRSRISMVKEIDISIMDFQKPLASTPSHKGTPSVLASDQKINSLEN
Sbjct: 601 SQGKNHRDNEVSKSPRSRISMVKEIDISIMDFQKPLASTPSHKGTPSVLASDQKINSLEN 660
Query: 661 APSPISVLDTSYYHTRLSYSFKDGETHSSEECWNPNSLPDTPQSKTSSEVSQIKPENFEA 720
APSPISVLDTSYYHTRLSYSFKDGETHSSEECWNPNSLPDTPQSKTSSEVSQIKPENFEA
Sbjct: 661 APSPISVLDTSYYHTRLSYSFKDGETHSSEECWNPNSLPDTPQSKTSSEVSQIKPENFEA 720
Query: 721 LIQKLEQLQSMNDEVANKKDHQYIYEILLASGLLHKELSFVAMPGQAWPSSCLINPELFL 780
LIQKLEQLQSMNDEVANKKDHQYIYEILLASGLLHKELSFVAMPGQAWPSSCLINPELFL
Sbjct: 721 LIQKLEQLQSMNDEVANKKDHQYIYEILLASGLLHKELSFVAMPGQAWPSSCLINPELFL 780
Query: 781 ILEQTKPDFASADQTVTKSSKANTEKLHRRIVFDLVNEITAQKMNIHCSASQSAKSLQLR 840
ILEQTKPDFASADQTVTKSSKANTEKLHRRIVFDLVNEITAQKMNIHCSASQSAKSLQLR
Sbjct: 781 ILEQTKPDFASADQTVTKSSKANTEKLHRRIVFDLVNEITAQKMNIHCSASQSAKSLQLR 840
Query: 841 KYNGWRLFKDLCTEVDRLQSESSAIKCSEEDGDERMLLVEDPLNGIEDWSFDSESPSTVL 900
KYNGWRLFKDLCTEVDRLQSESSAIKCSEEDGDERMLLVEDPLNGIEDWSFDSESPSTVL
Sbjct: 841 KYNGWRLFKDLCTEVDRLQSESSAIKCSEEDGDERMLLVEDPLNGIEDWSFDSESPSTVL 900
Query: 901 EIERLIYKDLIDEVIWDEATGKMQGGQWNLKRQLSFSSTS 940
EIERLIYKDLIDEVIWDEATGKMQGGQWNLKRQLSFSSTS
Sbjct: 901 EIERLIYKDLIDEVIWDEATGKMQGGQWNLKRQLSFSSTS 940
>Os03g0418700 Conserved hypothetical protein
Length = 925
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/954 (45%), Positives = 564/954 (59%), Gaps = 75/954 (7%)
Query: 19 EAPELERQMGCMAGIFQIFDXXXXXXXXXXXXXXXXXXXXXXGHTLPRXXXXXXXXXXXX 78
EA + +RQMGCMAG+FQIFD GH LP
Sbjct: 12 EASDFDRQMGCMAGMFQIFDRRRLLTARQRGGARGTAPP---GHVLPNSNSNVSIQNPVA 68
Query: 79 XKIVLEKTFSKSMTENXXXXXXXXXXXXXXXXXXXXXXLDGNKSIQQELPYINEQLFVQR 138
L+KTFSKSMTEN D N+ IQQEL YIN++ F +
Sbjct: 69 SNNTLDKTFSKSMTENSSLSMESSRASSSSSSCSSFSSTDINRPIQQELSYINKERFAGK 128
Query: 139 PLKSS--PSLKDPVMDTRSGQSNIGFRDIVKDSINRDTGGLTVKTSVKDARRNGQYKDSP 196
P +SS S+K + ++ + GFRDIVK+SINR+T G+T+KTS K++R+ G +KDSP
Sbjct: 129 PPRSSQTKSVKCSKTEAKTKDPHTGFRDIVKESINRETHGMTIKTSTKESRK-GLHKDSP 187
Query: 197 RPLLLSKSMDGTYVIGIDRSTKVPANAVESSRRFPEQSRFSCDDRRLLRPVEAQENKKPS 256
RPLL+SKS DGTYVIGIDRST VP ESSR RFSCDDR+LLR VEAQ++KKPS
Sbjct: 188 RPLLISKSTDGTYVIGIDRSTGVPGYVHESSR----PPRFSCDDRQLLRSVEAQDSKKPS 243
Query: 257 TRLKELPRLSLDSRKETLSSSSRQKTFSYRRTDDSLMDALRPQDSPGHRRASSVIAKLMG 316
+LKELPRLSLDSRKE+++ SR K Y RTDD+L+D L+ Q+SP H+RASSV+AKLMG
Sbjct: 244 AKLKELPRLSLDSRKESMNPCSRLKNSGYIRTDDNLLDVLKHQESPSHQRASSVVAKLMG 303
Query: 317 LEEAPNATGVLTVDSYEPERSPRPAEDTQKEHPVPSPRRFCQDPRESLPKDESPAMKTKP 376
LE T D +E RSP P TQ + P R QD + K+ SP +KT P
Sbjct: 304 LEGT-------TPDIHETARSPTPVHGTQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
Query: 377 SPRILTESAPWRQQEKIATSSKASQCRDAEVRPRTASLYAYIERRGGGLEFLECNKDFRA 436
SPRI+ E+APWRQ E+ T R AEV+PRTAS+YA I+RR GLE ECNK+ RA
Sbjct: 357 SPRIIPEAAPWRQNERAVTG------RAAEVKPRTASIYADIQRRLRGLELSECNKELRA 410
Query: 437 LRILEALHAKDAKRQNDGNGALTVAAQQAGDALNTSSRHFQPPIVVMKPARSTEKQPGVS 496
LRIL LH KD Q+D N LT ++A + + S +FQ PIV+MKPAR K P S
Sbjct: 411 LRILSTLHKKDGPSQSDNNPELTAIQKKASEQI-VDSENFQSPIVIMKPARCITK-PDAS 468
Query: 497 LASVDPLAGFRNLRKLQARDAPCIGEHETSTNEKVHSRISRAQSKSDEXXXXXXXXXXXX 556
V PL+ + +R+L+ + ++E S +++ HS A S +E
Sbjct: 469 DTLVAPLSRPKGIRRLRHEETSFTRKNENSDSKRNHSPNESAHSSGEEPVNSARSPRLSS 528
Query: 557 XXXXXXVQRKXXXXXXXXXXXXXXXXXXXXXXXXXXGGRTRTKPSQGKNHRDNE-VSKSP 615
Q+K GR R++ SQ K++ DN+ V P
Sbjct: 529 SLSPRLAQKKADSERRSRPPVLPTSPGKKSKETVSPRGRLRSRHSQTKSNSDNDNVLHIP 588
Query: 616 RSRISMVKEIDISIMDFQKPL------------ASTPSHKGTPSVLASD-QKINSLENAP 662
++I++ K+ID+ ++D PL ASTP+ + P++L +D +KI+ EN P
Sbjct: 589 ETKINLAKQIDVGVVDHPNPLNANSPYIHQSKIASTPNREEMPTILPADKKKIHPQENIP 648
Query: 663 SPISVLDTSYYH-------TRLSYSFKDGETHSSEECWNPNSLPDTPQSKTSSEVSQIKP 715
SP+SVLD ++YH R+S SFKDGETH+S+E WNP SLPDTP SK S++ +QIK
Sbjct: 649 SPVSVLDATFYHEGSSPSLKRISDSFKDGETHTSDESWNPTSLPDTPPSKASNDGNQIKA 708
Query: 716 ENFEALIQKLEQLQSMNDE----------VANKKDHQYIYEILLASGLLHKELSFVAMPG 765
EN +ALIQKLE LQ +++E VA KDHQY+YEIL ASG+LH +L+F MP
Sbjct: 709 ENMKALIQKLELLQMLSEEALKTDDTFSSVAANKDHQYLYEILSASGILHNKLNFQMMPH 768
Query: 766 QAWPSSCLINPELFLILEQTKPDFASADQTVTKSSKANTEKLHRRIVFDLVNEITAQKMN 825
Q PSS INPELFLILEQ KPD EKLHRR++FDL NE+ AQ+M+
Sbjct: 769 QLRPSSYPINPELFLILEQAKPD---------------EEKLHRRLIFDLANELLAQQMD 813
Query: 826 IHCSASQSAKSLQLRKYNGWRLFKDLCTEVDRLQSESSAIKCSEEDGDERMLLVEDPLNG 885
+ + + S + Q +K +GW+LFKDLC E+D +QS SS I+CSEE+ D R L ED + G
Sbjct: 814 ANHTVNSSVQFFQSKKLSGWQLFKDLCAEIDMIQSRSSMIRCSEEE-DSR--LAEDAMQG 870
Query: 886 IEDW-SFDSESPSTVLEIERLIYKDLIDEVIWDEATGKMQGGQWNLKRQLSFSS 938
+++W S DSE VL IE+ I+KDLIDE+I GK+ QW L+RQLSF S
Sbjct: 871 MKEWKSSDSERQGIVLAIEKSIFKDLIDEIISGVDKGKVHLTQWKLRRQLSFIS 924
>Os07g0109400 Conserved hypothetical protein
Length = 1089
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 163/582 (28%), Positives = 251/582 (43%), Gaps = 114/582 (19%)
Query: 21 PELERQM-GCMAGIFQIFDXXXXXXXXXXXXXXXXXXXXXXGHTLPRXXXXXXXXXXXXX 79
PEL RQ GC+ GI Q FD H L
Sbjct: 15 PELHRQQAGCVTGILQAFDRRYPLAAHHSHNRLLPP-----AHALSSSPSVGEERTRYSS 69
Query: 80 KIVLEKTFSKSMTENXXX--XXXXXXXXXXXXXXXXXXXLDGNKSIQQELPYINEQLFVQ 137
+IVL+K SKS +N LDGN+S QQ+L + LF +
Sbjct: 70 QIVLDKNMSKSWIDNQRAPLTVELSQGSYSSSSCSSSSSLDGNRSGQQDLSSTDRMLFPE 129
Query: 138 RPLKSSPSLK-------------DPVMDTRSGQSN---IGFRDIVKDSINRDTGGLTVKT 181
+P KSSP LK D + S Q + +G R++VKDSI RDT +++T
Sbjct: 130 KPFKSSPKLKSSSDSDCGVDYYLDDALAKLSAQPSYPTLGIRNLVKDSIYRDTRDFSIRT 189
Query: 182 SVKDARRNGQYK--DSPRPL------LLSKSMDGTYVIGIDRSTKV------PANAVESS 227
K+A ++ + D PR L + + GT + ID S +V P+ +V+
Sbjct: 190 FTKEAEKDHLFNCGDPPRILNEPPNSAIQEKNKGT--MDIDESLRVLAKLRNPSESVQQP 247
Query: 228 RRFPEQSRFSCDDRRLLRPVEAQENKKPSTRLKELPRLSLDSRKETLSSSSRQKTFSYR- 286
R + RFSC E ++ +++L+E+PRLSLD ++ L R + R
Sbjct: 248 RLSYDAPRFSC------------EGRESASKLREVPRLSLDIKESPL----RNREIDVRP 291
Query: 287 ---RTDDSLMDALRPQDSP---------GHRRASSVIAKLMGLEEAPNATGVLTVDSYEP 334
TD+ ++ SP +R SV+AKLMGLE+ P + S
Sbjct: 292 KPSMTDEDRRSSISKDYSPPLETQQEHNACKRLPSVVAKLMGLEDLPEHKDNTAISSQVS 351
Query: 335 ERSPRPAEDTQKEHPVPSPRRFCQDPRESLPKDESPAMKTKPSPRILTESAPWRQQEKIA 394
+ +E+ P+ + PR+ D + +K P+ + E+APW+QQEKI
Sbjct: 352 KSVTERSEEPTMLRPLSLSSQNEATPRQQRNLDAT--IKNVPNSKFPVETAPWKQQEKIV 409
Query: 395 ------TSSKASQCRDAEVRPRTASLYAYIERRGGGLEFLECNKDFRALR-ILEALHAK- 446
SK + ++ AS+Y+ IE+R L+F + NKD RAL+ IL+++ AK
Sbjct: 410 LPRKLPKGSKGAHGKEQHA----ASVYSEIEKRLKDLDFQQSNKDLRALKQILDSMQAKG 465
Query: 447 ---DAKRQN-------DG---NGALTVA---------AQQAGDAL--------NTSSRHF 476
+ KR+ DG NG +T +QA + +T+ R F
Sbjct: 466 LLQNKKREEPSMPKIYDGDHDNGDVTDVNLRLNSTSNTKQAPEGTPSFTTEEDSTTERSF 525
Query: 477 QPPIVVMKPARSTEKQPGVSL-ASVDPLAGFRNLRKLQARDA 517
+ PIV+MKPA+S + V+ ++V PL G L +L+ ++
Sbjct: 526 KSPIVIMKPAKSADLLSDVTEDSAVGPLGGLSELPQLRTANS 567
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 173/381 (45%), Gaps = 63/381 (16%)
Query: 605 NHRDNEVSKSPRSRISMVKEIDISIMDFQKPL----------ASTPSHKGTPSVLAS--- 651
N N++S IS+ E+D+ + + TPS + V S
Sbjct: 719 NQEGNDMSARSDGSISVASELDVEVTSTDRSAEVNILRSQHGTQTPSGRNPQKVKTSYDA 778
Query: 652 DQKINSLENA------PSPISVLDTSY-----YHTR--LSYSFKDGETH---SSEECWNP 695
++ + S++ A PSP+SVLD+S+ +HT + S D E H S E C
Sbjct: 779 NKDLPSMDPAATITERPSPVSVLDSSFDQEEFFHTSKTTNSSNVDDEHHPSPSEESC--- 835
Query: 696 NSLPDTPQSKTSSEV----SQIKPENFEALIQKLEQLQSMNDEV-----------ANKKD 740
P K S+E+ K N +L++KL+QL DE D
Sbjct: 836 -----KPSEKKSTELPTQPKNSKLANIASLLKKLQQLSVNKDEAPPVDHIAFLCETPSPD 890
Query: 741 HQYIYEILLASGLLHKELSFVAMPGQAWPSSCLINPELFLILEQTKPDFASADQTVTKSS 800
H+Y+ EILLASGLL K+L Q S INP+LF +LEQ K + S + + +S
Sbjct: 891 HRYVSEILLASGLLMKDLGSGLSQMQLHTSGYPINPDLFFVLEQRKSGWTSKPEGIHQSR 950
Query: 801 KA----NTEKLHRRIVFDLVNEITAQKMNIHCSASQSAKSLQLRKYNGWRLFKDLCTEVD 856
+ ++ HR+++F+ VNE+ K + + +G +L K +C+ ++
Sbjct: 951 STTKPDDPKRAHRKLMFEAVNELLLDKFEKETTLITGVAARDPVMSSGQQLVKMICSGIE 1010
Query: 857 RLQSESSAIKCSEEDGDERMLLVEDPLNGIEDWS---FDSESPSTVLEIERLIYKDLIDE 913
L++E S + C E D ++ + LN +E WS E P VLEIER I+K+L+DE
Sbjct: 1011 CLKTERSRM-CQE---DSSVIPDAEILNRLEGWSPSFIRRELPGMVLEIERSIFKELVDE 1066
Query: 914 VIWDEATGKMQGGQWNLKRQL 934
V+ E+ +R+L
Sbjct: 1067 VVRGESADGQPAKAGRRRRRL 1087
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,040,856
Number of extensions: 1179195
Number of successful extensions: 3021
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2990
Number of HSP's successfully gapped: 4
Length of query: 940
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 830
Effective length of database: 11,292,261
Effective search space: 9372576630
Effective search space used: 9372576630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 161 (66.6 bits)