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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0603300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.64 (0.0489) R2 : 0.344
β1 : -1.94 (0.192) R2dD : 0.182 R2D : -0.026
β2 : 0.87 (0.12) R2dC : 0.074 R2C : 0.0644
β3 : 2.45 (0.199) R2dE : 0.281 R2E : 0.0572
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.652 (0.111) R2dN8 : 0.0808 R2N8 : -0.0596
σ : 0.897
deviance : 370.52
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_____
C
peak time of C : 3.24
E
wheather : temperature
threshold : 19.9
memory length : 4541
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.41
open length of G : 0.246

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
365.51 0.898 4.71 -2.4 0.865 2.49 -0.993 -1.91 -0.796 3.13 20.37 4573 7.47 0.277
367.36 0.893 4.65 -2 0.851 2.47 -0.993 -- -0.677 3.11 19.93 4563 7.48 0.252
368.62 0.894 4.7 -2.35 0.866 2.46 -- -1.84 -0.778 3.3 20.4 4571 7.47 0.267
370.52 0.897 4.64 -1.94 0.87 2.45 -- -- -0.652 3.24 19.9 4541 7.41 0.246
410.93 0.944 4.7 -2.32 -- 2.52 -- -1.8 -0.767 -- 20.47 4534 7.47 0.233
488.89 1.04 4.52 -1.01 0.961 -- -0.714 -- -0.141 3.81 -- -- -- --
490.34 1.04 4.52 -0.996 0.96 -- -- -- -0.137 3.94 -- -- -- --
411.75 0.945 4.64 -1.85 -- 2.45 -- -- -0.641 -- 20.3 4567 7.48 0.0164
436.64 0.973 4.66 -- 0.735 1.74 -- -- -0.368 3.26 22.7 4583 6.62 0.283
540.8 1.09 4.52 -0.957 -- -- -- -- -0.111 -- -- -- -- --
516.49 1.06 4.49 -- 0.941 -- -- -- -0.0261 3.95 -- -- -- --
467.27 1.01 4.55 -- -- 1.8 -- -- -0.264 -- 22.88 4633 6.78 0.00789
564.94 1.11 4.5 -- -- -- -- -- -0.00526 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 381.04 temperature 30 14400 < th dose independent rect. 16 1
2 381.11 temperature 30 14400 < th dose independent rect. 15 18
3 381.22 temperature 30 14400 > th dose independent rect. 15 2
4 381.24 temperature 30 14400 > th dose independent rect. 15 18
7 381.55 temperature 30 14400 < th dose independent rect. 15 5
8 381.55 temperature 30 14400 < th dose independent rect. 15 16
11 381.57 temperature 30 14400 < th dose independent rect. 15 7
12 381.58 temperature 30 14400 < th dose independent rect. 15 12
21 381.70 temperature 30 14400 > th dose independent rect. 15 4
37 382.08 radiation 30 4320 > th dose independent rect. 15 17
39 382.30 radiation 20 4320 < th dose independent rect. 16 11
56 382.46 temperature 25 14400 > th dose dependent rect. 18 1
79 382.80 radiation 20 4320 < th dose independent rect. 16 3
81 382.84 radiation 20 4320 < th dose independent rect. 16 1
88 383.12 temperature 30 14400 > th dose independent sin 13 NA
89 383.17 temperature 30 14400 < th dose independent sin 13 NA
100 383.77 temperature 20 4320 > th dose dependent rect. 7 1
102 383.91 temperature 20 4320 > th dose dependent rect. 6 5
103 384.01 temperature 20 4320 > th dose dependent rect. 6 3
119 384.07 temperature 25 14400 > th dose dependent rect. 16 6
124 384.17 temperature 25 14400 > th dose dependent rect. 17 4
146 384.32 radiation 20 4320 > th dose dependent rect. 16 1
273 385.76 temperature 20 4320 > th dose dependent rect. 6 18
308 386.15 temperature 25 1440 > th dose dependent rect. 18 1
311 386.17 temperature 20 4320 > th dose dependent sin 4 NA
330 386.29 temperature 20 4320 > th dose dependent rect. 18 21
335 386.32 temperature 20 4320 > th dose dependent rect. 21 18
345 386.37 temperature 25 4320 > th dose independent rect. 6 3
368 386.44 temperature 25 14400 > th dose dependent rect. 16 16
393 386.53 radiation 30 4320 < th dose independent rect. 15 17
415 386.59 temperature 20 4320 > th dose dependent rect. 21 23
439 386.63 temperature 20 4320 > th dose dependent no NA NA
467 386.69 radiation 20 4320 > th dose dependent rect. 15 17
498 386.72 temperature 20 4320 > th dose dependent rect. 12 23
559 386.95 temperature 20 43200 > th dose independent rect. 19 1
585 387.06 temperature 25 4320 < th dose independent rect. 6 3
596 387.09 temperature 25 14400 > th dose dependent sin 14 NA
710 387.62 temperature 30 14400 > th dose independent rect. 18 23
714 387.65 temperature 30 14400 < th dose independent rect. 5 15
715 387.65 temperature 30 14400 < th dose independent rect. 18 23
720 387.66 temperature 30 14400 < th dose independent rect. 2 17
727 387.66 temperature 30 14400 < th dose independent rect. 23 20
751 387.67 temperature 30 14400 < th dose independent rect. 21 22
761 387.68 temperature 30 14400 > th dose independent no NA NA
762 387.68 temperature 30 14400 < th dose independent no NA NA
763 387.68 temperature 30 14400 > th dose independent rect. 8 11
764 387.68 temperature 30 14400 < th dose independent rect. 8 11
875 387.68 temperature 30 14400 < th dose independent rect. 8 23
884 387.69 temperature 30 14400 < th dose independent rect. 8 19
967 387.91 temperature 15 4320 > th dose dependent rect. 18 1