BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0589600 Os07g0589600|Os07g0589600
(285 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0589600 Conserved hypothetical protein 262 2e-70
Os03g0439000 Conserved hypothetical protein 84 1e-16
>Os07g0589600 Conserved hypothetical protein
Length = 285
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/273 (55%), Positives = 151/273 (55%)
Query: 13 SVAKDTGDDFEFCXXXXXXXXXXXXXXXXXDMCVADEVFSQGKLLPLRXXXXXXXXXXXX 72
SVAKDTGDDFEFC DMCVADEVFSQGKLLPLR
Sbjct: 13 SVAKDTGDDFEFCVLSSGGLVSAGAGAAAADMCVADEVFSQGKLLPLRLSSAAAGDAAGL 72
Query: 73 XVLPRSESVASTVGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 132
VLPRSESVASTVGF
Sbjct: 73 GVLPRSESVASTVGFGSRSDSRSASSSGSSSGCVSRSESSKSASSDHSAAHPPPQQQQQP 132
Query: 133 XXXXXXXXFYAHPSPSPQLXXXXXXXXXXXXXXXXXXXXWGIFRLGVVGAPDVYPPRSTD 192
FYAHPSPSPQL WGIFRLGVVGAPDVYPPRSTD
Sbjct: 133 RRSLSSSLFYAHPSPSPQLRTRPPRRSTGSAPPPPPATAWGIFRLGVVGAPDVYPPRSTD 192
Query: 193 SKNAAAAAKVGSSRSARFEPASTAADKKHPVVGLFGDSFGCKCSPDVVEPVTLPXXXXXX 252
SKNAAAAAKVGSSRSARFEPASTAADKKHPVVGLFGDSFGCKCSPDVVEPVTLP
Sbjct: 193 SKNAAAAAKVGSSRSARFEPASTAADKKHPVVGLFGDSFGCKCSPDVVEPVTLPAAAKRA 252
Query: 253 XXXXXXXXXXXXXQSVRRSRILDWFEELTITKK 285
QSVRRSRILDWFEELTITKK
Sbjct: 253 KAKNKNKAGDKKAQSVRRSRILDWFEELTITKK 285
>Os03g0439000 Conserved hypothetical protein
Length = 315
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 141 FYAHPSPSPQ----LXXXXXXXXXXXXXXXXXXXXWGIFRLGVVGAPDVYPPRSTDSKNA 196
FYAHPSPSP+ L WG+ RLGVVGAPDVY
Sbjct: 155 FYAHPSPSPRPSQRLSGGGGGSAGRRSTGSAPPASWGLLRLGVVGAPDVY------PPRP 208
Query: 197 AAAAKVGSSRSARFE-PASTAAD----KKHPVVGLFGDSFGCKCSPDVVEPV-------- 243
A AA G SRSARFE P + A D +K+ +G G C CSPD VEPV
Sbjct: 209 APAAARGGSRSARFEQPRAAAKDAVAWEKNLPLGFLGAGLVCNCSPDAVEPVGSAEAAAA 268
Query: 244 -TLPXXXXXXXXXXXXXXXXXXXQSVRRSRILDWFEELTITKK 285
++RRSRIL+W EEL+I+K+
Sbjct: 269 AAARRRRRKVAEKNTGEVKSGQSNTIRRSRILEWLEELSISKE 311
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,305,690
Number of extensions: 147056
Number of successful extensions: 602
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 3
Length of query: 285
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 185
Effective length of database: 11,814,401
Effective search space: 2185664185
Effective search space used: 2185664185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)