Os07g0589600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0589600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.43 | 0.543 | 9.08 | 0.724 | 2.15 | -0.912 | -0.73 | 0.262 | 0.225 | 11.6 | 20.3 | 525 | -- | -- |
| 133.57 | 0.538 | 9.08 | 0.661 | 2.14 | -0.901 | -0.776 | -- | 0.218 | 11.6 | 20.5 | 531 | -- | -- |
| 135.35 | 0.542 | 9.07 | 0.752 | 2.14 | -0.884 | -- | 0.511 | 0.242 | 11.5 | 20.4 | 561 | -- | -- |
| 136.02 | 0.543 | 9.09 | 0.643 | 2.14 | -0.917 | -- | -- | 0.218 | 11.6 | 20.57 | 551 | -- | -- |
| 392.53 | 0.923 | 9.09 | 0.667 | -- | -1.33 | -- | 0.0987 | 0.46 | -- | 25 | 833 | -- | -- |
| 159.25 | 0.592 | 9.13 | 0.356 | 2.21 | -- | -0.753 | -- | 0.0212 | 11.4 | -- | -- | -- | -- |
| 161.69 | 0.595 | 9.13 | 0.325 | 2.22 | -- | -- | -- | 0.0181 | 11.4 | -- | -- | -- | -- |
| 392.74 | 0.923 | 9.08 | 0.675 | -- | -1.35 | -- | -- | 0.478 | -- | 25 | 844 | -- | -- |
| 145.76 | 0.562 | 9.11 | -- | 2.16 | -0.734 | -- | -- | 0.117 | 11.5 | 20.5 | 510 | -- | -- |
| 469.99 | 1.01 | 9.18 | 0.268 | -- | -- | -- | -- | -0.00425 | -- | -- | -- | -- | -- |
| 164.48 | 0.6 | 9.14 | -- | 2.21 | -- | -- | -- | -0.0181 | 11.4 | -- | -- | -- | -- |
| 404.41 | 0.937 | 9.08 | -- | -- | -1.27 | -- | -- | 0.408 | -- | 25 | 844 | -- | -- |
| 471.88 | 1.01 | 9.19 | -- | -- | -- | -- | -- | -0.034 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.69 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 5 |
| 4 | 127.18 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 10 |
| 6 | 127.31 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 9 | 127.55 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 23 | 129.00 | temperature | 20.0 | 720 | > th | dose independent | sin | 12 | NA |
| 24 | 129.03 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 31 | 129.37 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 1 |
| 40 | 129.58 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 19 |
| 44 | 129.76 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 49 | 129.94 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 11 |
| 73 | 130.64 | temperature | 20.0 | 720 | < th | dose independent | sin | 12 | NA |
| 142 | 132.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 143 | 132.05 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 145 | 132.11 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 151 | 132.25 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 161 | 132.55 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 164 | 132.56 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 20 |
| 173 | 132.75 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 175 | 132.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 180 | 132.86 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 192 | 132.99 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 200 | 133.05 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 201 | 133.06 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 2 |
| 204 | 133.09 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 207 | 133.14 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 232 | 133.38 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 236 | 133.42 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 239 | 133.42 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 321 | 134.05 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 323 | 134.07 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 415 | 134.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 11 |
| 431 | 134.71 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 466 | 134.93 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 483 | 134.99 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 517 | 135.14 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 23 |
| 538 | 135.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 552 | 135.30 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 561 | 135.32 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 562 | 135.33 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 3 |
| 575 | 135.38 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 590 | 135.47 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 592 | 135.47 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 594 | 135.47 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 647 | 135.47 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 649 | 135.47 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 651 | 135.47 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 715 | 135.57 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 757 | 135.72 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 775 | 135.82 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 789 | 135.88 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 829 | 136.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 830 | 136.02 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 925 | 136.29 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 12 |
| 972 | 136.51 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 23 |