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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0439000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.23 (0.0542) R2 : 0.497
β1 : 0.913 (0.201) R2dD : 0.0241 R2D : -0.00896
β2 : 2.64 (0.13) R2dC : 0.469 R2C : 0.429
β3 : 2.99 (0.492) R2dE : 0.0427 R2E : -0.0136
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.456 (0.116) R2dN8 : 0.0229 R2N8 : 0.00224
σ : 1.01
deviance : 471.16
__
_____
C
peak time of C : 11
E
wheather : wind
threshold : 10.2
memory length : 652
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
466.48 1.01 6.2 0.787 2.64 1.3 0.732 -8.08 0.459 11 10.2 661 -- --
470.21 1.01 6.24 0.78 2.57 2.52 0.662 -- 0.4 11 10.2 713 -- --
468.7 1.01 6.2 0.814 2.64 1.27 -- -8.46 0.463 10.9 10.2 661 -- --
471.16 1.01 6.23 0.913 2.64 2.99 -- -- 0.456 11 10.2 652 -- --
898.12 1.4 6.27 0.953 -- 0.972 -- -7.6 0.477 -- 9.927 655 -- --
505.19 1.05 6.25 0.665 2.57 -- 0.973 -- 0.368 11.1 -- -- -- --
509.19 1.06 6.25 0.704 2.56 -- -- -- 0.37 11.1 -- -- -- --
897.25 1.4 6.27 0.98 -- 2.41 -- -- 0.47 -- 9.1 84 -- --
492.31 1.03 6.26 -- 2.63 2.62 -- -- 0.349 10.9 10.2 664 -- --
918.7 1.42 6.32 0.645 -- -- -- -- 0.35 -- -- -- -- --
522.25 1.07 6.27 -- 2.56 -- -- -- 0.292 11 -- -- -- --
913.8 1.41 6.32 -- -- 2.23 -- -- 0.317 -- 9.2 97 -- --
929.69 1.42 6.33 -- -- -- -- -- 0.278 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 455.87 wind 9 720 > th dose dependent rect. 15 1
2 456.50 wind 9 720 < th dose independent rect. 21 23
3 456.92 radiation 10 720 < th dose independent rect. 7 16
7 458.60 wind 9 270 < th dose independent sin 10 NA
9 460.11 radiation 10 720 < th dose independent sin 21 NA
13 460.72 radiation 10 720 < th dose independent rect. 4 19
17 461.15 wind 9 720 > th dose independent rect. 15 1
22 461.98 wind 9 270 > th dose independent rect. 18 5
27 462.29 wind 9 30 < th dose independent sin 10 NA
28 462.41 wind 9 720 < th dose independent sin 1 NA
33 462.74 wind 9 720 < th dose independent rect. 13 15
64 463.88 wind 9 270 > th dose dependent rect. 17 9
72 463.93 radiation 10 720 < th dose independent rect. 13 10
81 464.31 wind 9 270 > th dose dependent rect. 17 6
89 464.52 radiation 10 720 < th dose independent rect. 1 22
127 466.51 radiation 10 720 < th dose independent rect. 24 18
130 466.74 wind 9 30 > th dose independent sin 12 NA
146 467.44 wind 9 720 < th dose independent sin 18 NA
147 467.47 radiation 1 4320 < th dose dependent rect. 2 3
150 467.61 humidity 80 1440 < th dose dependent rect. 21 11
152 467.66 wind 9 720 < th dose independent rect. 5 23
153 467.69 wind 9 720 < th dose independent rect. 5 15
158 467.88 wind 9 720 > th dose dependent rect. 21 20
159 467.91 wind 9 720 > th dose dependent rect. 19 22
162 467.98 radiation 10 720 < th dose independent rect. 14 1
163 467.98 wind 7 720 < th dose independent rect. 7 10
165 468.01 wind 9 720 > th dose dependent rect. 1 16
170 468.05 wind 9 720 > th dose dependent rect. 9 8
200 468.43 wind 9 270 > th dose dependent sin 10 NA
207 468.66 radiation 1 4320 < th dose dependent rect. 4 1
210 468.80 radiation 10 720 < th dose independent rect. 24 15
219 469.09 humidity 80 1440 < th dose independent rect. 1 7
222 469.16 radiation 10 720 < th dose independent rect. 20 22
223 469.21 wind 9 270 > th dose independent sin 12 NA
224 469.24 wind 5 270 > th dose dependent rect. 21 2
244 469.89 wind 9 270 > th dose independent rect. 21 1
246 469.89 wind 9 270 > th dose dependent rect. 21 1
248 469.94 radiation 20 10 < th dose dependent rect. 23 23
249 469.96 wind 9 90 > th dose dependent rect. 21 5
259 470.02 radiation 10 720 < th dose independent rect. 12 23
269 470.17 wind 5 90 > th dose dependent rect. 21 5
284 470.32 humidity 80 1440 < th dose independent rect. 21 11
286 470.36 radiation 10 720 < th dose independent no NA NA
291 470.52 wind 7 720 < th dose independent rect. 23 19
292 470.55 wind 9 720 > th dose dependent sin 1 NA
296 470.63 wind 9 720 > th dose independent rect. 19 22
299 470.64 wind 9 90 > th dose independent rect. 21 5
310 470.67 wind 7 270 < th dose independent rect. 14 13
342 470.87 temperature 25 10 < th dose dependent rect. 24 16
357 471.01 wind 9 720 > th dose independent rect. 1 16
373 471.10 wind 9 720 > th dose independent rect. 9 8
387 471.17 radiation 10 720 < th dose independent rect. 10 23
392 471.20 temperature 20 720 > th dose independent rect. 11 10
394 471.20 wind 9 720 > th dose dependent rect. 14 23
398 471.23 radiation 10 14400 < th dose dependent rect. 23 1
400 471.27 temperature 25 10 < th dose dependent sin 4 NA
421 471.31 humidity 50 1440 > th dose dependent rect. 3 1
423 471.33 wind 9 720 > th dose dependent rect. 9 13
459 471.34 wind 9 720 > th dose dependent no NA NA
509 471.39 humidity 80 1440 > th dose independent rect. 24 8
544 471.54 temperature 25 10 < th dose dependent rect. 24 22
547 471.57 radiation 10 720 < th dose independent rect. 16 23
550 471.59 wind 9 720 > th dose dependent rect. 11 23
551 471.60 humidity 90 1440 < th dose dependent rect. 3 1
574 471.88 radiation 1 4320 > th dose independent rect. 5 1
575 471.88 radiation 1 4320 < th dose independent rect. 5 1
612 472.12 radiation 1 4320 < th dose dependent rect. 24 6
615 472.14 wind 9 720 < th dose independent rect. 16 9
618 472.15 radiation 1 4320 < th dose dependent rect. 19 11
622 472.17 wind 9 720 < th dose independent rect. 23 23
696 472.61 wind 9 720 > th dose independent sin 0 NA
707 472.70 temperature 25 90 < th dose dependent rect. 12 11
708 472.71 wind 9 30 < th dose independent sin 14 NA
713 472.73 radiation 10 720 < th dose independent rect. 16 7
723 472.78 wind 7 720 < th dose independent rect. 7 18
728 472.85 wind 9 720 < th dose independent rect. 3 16
731 472.87 wind 9 720 < th dose independent no NA NA
732 472.87 wind 1 90 > th dose independent rect. 1 18
738 472.95 radiation 1 4320 > th dose independent rect. 18 12
766 473.16 wind 9 720 > th dose independent rect. 11 23
780 473.23 radiation 1 4320 < th dose independent rect. 18 12
812 473.36 wind 9 720 > th dose independent rect. 9 13
847 473.37 wind 9 720 > th dose independent no NA NA
881 473.38 wind 9 720 > th dose independent rect. 14 23
882 473.39 humidity 80 1440 > th dose independent rect. 21 11
914 473.49 humidity 50 720 > th dose dependent rect. 2 7
929 473.54 wind 9 720 > th dose independent rect. 11 11
974 473.73 humidity 90 1440 < th dose independent rect. 3 1