BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0574600 Os07g0574600|Os07g0574600
(327 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0574600 624 e-179
Os01g0372300 389 e-108
Os07g0574633 Conserved hypothetical protein 162 2e-40
Os07g0574666 83 3e-16
Os07g0574500 Ubiquitin domain containing protein 79 6e-15
Os07g0574300 65 5e-11
>Os07g0574600
Length = 327
Score = 624 bits (1610), Expect = e-179, Method: Compositional matrix adjust.
Identities = 308/327 (94%), Positives = 308/327 (94%)
Query: 1 MSSKATGEDDADDSSSPEVEASSLITLRVKDSEGVRITRTMRTTDALDDLMDFYLGMVPA 60
MSSKATGEDDADDSSSPEVEASSLITLRVKDSEGVRITRTMRTTDALDDLMDFYLGMVPA
Sbjct: 1 MSSKATGEDDADDSSSPEVEASSLITLRVKDSEGVRITRTMRTTDALDDLMDFYLGMVPA 60
Query: 61 DMDAAEGVFMHYGRRVTGDRTPADYDMEDGDEVSFFPDGXXXXXXXXXXXDNNGRRVTHT 120
DMDAAEGVFMHYGRRVTGDRTPADYDMEDGDEVSFFPDG DNNGRRVTHT
Sbjct: 61 DMDAAEGVFMHYGRRVTGDRTPADYDMEDGDEVSFFPDGTWTTPVTLTVTDNNGRRVTHT 120
Query: 121 MRRLHILDILFDLYFAMLPSTAPREGAFIYHCRELSPKQTPEECNMKDGDEIAFSPFSKP 180
MRRLHILDILFDLYFAMLPSTAPREGAFIYHCRELSPKQTPEECNMKDGDEIAFSPFSKP
Sbjct: 121 MRRLHILDILFDLYFAMLPSTAPREGAFIYHCRELSPKQTPEECNMKDGDEIAFSPFSKP 180
Query: 181 SAFVTLTIRXXXXXXXXSVVVTRTMLRTQERLQDLIDLYFAMVPTDDERGEFDVTYCGRK 240
SAFVTLTIR SVVVTRTMLRTQERLQDLIDLYFAMVPTDDERGEFDVTYCGRK
Sbjct: 181 SAFVTLTIRGNNNNGGGSVVVTRTMLRTQERLQDLIDLYFAMVPTDDERGEFDVTYCGRK 240
Query: 241 VDIEKTPADYGMEDGDQLRLAPATERSRFVTINLVTMVGVKRAYTLRRTDELQGLMDLCL 300
VDIEKTPADYGMEDGDQLRLAPATERSRFVTINLVTMVGVKRAYTLRRTDELQGLMDLCL
Sbjct: 241 VDIEKTPADYGMEDGDQLRLAPATERSRFVTINLVTMVGVKRAYTLRRTDELQGLMDLCL 300
Query: 301 SREPASMYQNGCIFLYNGLCSRLGNSG 327
SREPASMYQNGCIFLYNGLCSRLGNSG
Sbjct: 301 SREPASMYQNGCIFLYNGLCSRLGNSG 327
>Os01g0372300
Length = 352
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/318 (66%), Positives = 236/318 (74%), Gaps = 11/318 (3%)
Query: 11 ADDSSSPEVEASSLITLRVKDSEGVRITRTMRTTDALDDLMDFYLGMV-PADMDAAEGV- 68
A S+ EVEAS+LITLRVKD+EGVRIT TMR TD L L+ FYL MV P D V
Sbjct: 8 AMSSAGEEVEASTLITLRVKDNEGVRITCTMRRTDKLRVLIGFYLDMVTPTDKGKGAAVA 67
Query: 69 -------FMHYGRRVTGDRTPADYDMEDGDEVSFFPDGXXXXXXXXXXXDNNGRRVTHTM 121
FMHYGR VTG+RTPADYDMEDGDEVSFFPDG DN GRRVTHTM
Sbjct: 68 AAAGGGVFMHYGRCVTGNRTPADYDMEDGDEVSFFPDGTRTMPVTLTVKDNKGRRVTHTM 127
Query: 122 RRLHILDILFDLYFAMLPSTAPREGAFIYHCRELSPKQTPEECNMKDGDEIAFSPFSKPS 181
RRL ++ LF LYF MLPSTAPREG F+Y+ RE+S QTPE+C+M DGDEI F FSKPS
Sbjct: 128 RRLDVICTLFRLYFDMLPSTAPREGVFMYNGREISFYQTPEKCDMNDGDEITFHLFSKPS 187
Query: 182 AFVTLTIRXXXXXXXXS-VVVTRTMLRTQERLQDLIDLYFAMVPTDDERGEFDVTYCGRK 240
FVTLTI+ S VVVTR M RT E LQ LID YFAMVPTDD+ GE+ VTY GR+
Sbjct: 188 TFVTLTIKGSTDDGGRSGVVVTRPMRRTDE-LQRLIDYYFAMVPTDDQNGEWAVTYGGRQ 246
Query: 241 VDIEKTPADYGMEDGDQLRLAPATERSRFVTINLVTMVGVKRAYTLRRTDELQGLMDLCL 300
V E+TPADY MEDGDQLRL PA++ SRFVTI+L+TMV KR YTLRRTD+LQGLMDLCL
Sbjct: 247 VGGEETPADYEMEDGDQLRLVPASKPSRFVTIDLLTMVKAKRTYTLRRTDKLQGLMDLCL 306
Query: 301 SREPASMYQNGCIFLYNG 318
SREPASMY++GC+ +Y G
Sbjct: 307 SREPASMYRHGCVLIYEG 324
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 131/259 (50%), Gaps = 16/259 (6%)
Query: 8 EDDADDSSSPEVEASSLITLRVKDSEGVRITRTMRTTDALDDLMDFYLGMVPADMDAAEG 67
ED + S P+ + +TL VKD++G R+T TMR D + L Y M+P+ EG
Sbjct: 94 EDGDEVSFFPDGTRTMPVTLTVKDNKGRRVTHTMRRLDVICTLFRLYFDMLPSTA-PREG 152
Query: 68 VFMHYGRRVTGDRTPADYDMEDGDEVSFF---PDGXXXXXXXXXXXDNNGRR---VTHTM 121
VFM+ GR ++ +TP DM DGDE++F D+ GR VT M
Sbjct: 153 VFMYNGREISFYQTPEKCDMNDGDEITFHLFSKPSTFVTLTIKGSTDDGGRSGVVVTRPM 212
Query: 122 RRLHILDILFDLYFAMLPSTAPR-EGAFIYHCRELSPKQTPEECNMKDGDEIAFSPFSKP 180
RR L L D YFAM+P+ E A Y R++ ++TP + M+DGD++ P SKP
Sbjct: 213 RRTDELQRLIDYYFAMVPTDDQNGEWAVTYGGRQVGGEETPADYEMEDGDQLRLVPASKP 272
Query: 181 SAFVTLTIRXXXXXXXXSVVVTRT-MLRTQERLQDLIDLYFAMVPTDDERGEFDVTYCGR 239
S FVT+ + V RT LR ++LQ L+DL + P R + Y GR
Sbjct: 273 SRFVTIDL-------LTMVKAKRTYTLRRTDKLQGLMDLCLSREPASMYRHGCVLIYEGR 325
Query: 240 KVDIEKTPADYGMEDGDQL 258
+V +TP D +EDGD +
Sbjct: 326 RVQDSQTPDDLKLEDGDTI 344
>Os07g0574633 Conserved hypothetical protein
Length = 173
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 114/196 (58%), Gaps = 36/196 (18%)
Query: 1 MSSKAT-GEDDADDSSSPEVEASSLITLRVKDSEGVRITRTMRTTDALDDLMDFYLGMV- 58
MSS AT GE D S SPEVE S L+TLRVKDSEGVRITRTMR TD L DL DFYL MV
Sbjct: 1 MSSSATRGEAD---SPSPEVEPSVLVTLRVKDSEGVRITRTMRRTDKLRDLTDFYLAMVV 57
Query: 59 PADMDAAE-----GVFMHYGRRVTGDRTPADYDMEDGDEVSFFPDGXXXXXXXXXXXDNN 113
PA + GVFMHYGRRVTG TPADYDM+DGDEVSFFPD D+
Sbjct: 58 PAAVAQGHVCRPVGVFMHYGRRVTGYETPADYDMDDGDEVSFFPDRVMSLPVTLTVKDSK 117
Query: 114 GRRVTHTMRRLHILDILFDLYFAMLPSTAPREGAFIYHCRELSPKQTPEECNMKDGDEIA 173
GR VT TMRR+ L++ +L P +M+DGDEI
Sbjct: 118 GRTVTRTMRRIEKLNVDGELM--------------------------PTSYDMEDGDEIT 151
Query: 174 FSPFSKPSAFVTLTIR 189
F P SKPS VTL ++
Sbjct: 152 FVPISKPSMLVTLKMK 167
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 40/176 (22%)
Query: 111 DNNGRRVTHTMRRLHILDILFDLYFAMLPSTAPREG-------AFIYHCRELSPKQTPEE 163
D+ G R+T TMRR L L D Y AM+ A +G F+++ R ++ +TP +
Sbjct: 29 DSEGVRITRTMRRTDKLRDLTDFYLAMVVPAAVAQGHVCRPVGVFMHYGRRVTGYETPAD 88
Query: 164 CNMKDGDEIAFSPFSKPSAFVTLTIRXXXXXXXXSVVVTRTMLRTQERLQDLIDLYFAMV 223
+M DGDE++F P S VTLT++ RT+ RT R++ L
Sbjct: 89 YDMDDGDEVSFFPDRVMSLPVTLTVKDSKG---------RTVTRTMRRIEKL-------- 131
Query: 224 PTDDERGEFDVTYCGRKVDIEKTPADYGMEDGDQLRLAPATERSRFVTINLVTMVG 279
VD E P Y MEDGD++ P ++ S VT+ + VG
Sbjct: 132 ----------------NVDGELMPTSYDMEDGDEITFVPISKPSMLVTLKMKGRVG 171
>Os07g0574666
Length = 114
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 5/99 (5%)
Query: 222 MVPTDDE-RGEFDVTYCGRKVDIEKTPADYGMEDGDQLRLAPATERSRFVTINLVTM-VG 279
MVP D GE V Y G+ V+ EKTPAD MEDGDQ++ + + VT+ V++
Sbjct: 1 MVPADKYCDGECQVVYGGKTVEGEKTPADCEMEDGDQIKRMSSMFVT--VTVGFVSLGKN 58
Query: 280 VKRAYTLRRTDELQGLMDLCLSREPASMYQNGCIFLYNG 318
++ A+TLRRTD+LQGLMDLC S P S Y++GC FL++G
Sbjct: 59 IEHAHTLRRTDKLQGLMDLCSSMMP-SRYKHGCRFLFDG 96
>Os07g0574500 Ubiquitin domain containing protein
Length = 110
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 9 DDADDSSSPEVE-ASSLITLRVKDSEGVRITRTMRTTDALDDLMDFYLGMVPADMDAAEG 67
++ DD +P + A +TL+V+D++G + RTMR T+ L LMDFY + G
Sbjct: 14 EEEDDGKTPAAKRAGEYVTLKVQDTDGRAVYRTMRWTEQLQGLMDFYYDRAHGRVQRGTG 73
Query: 68 VFMHYGRRVTGDRTPADYDMEDGDEVSFFPD 98
F++ GRR++G +TPA+ DMEDGDEV FF +
Sbjct: 74 RFLYDGRRLSGWQTPAELDMEDGDEVDFFEE 104
>Os07g0574300
Length = 130
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 21 ASSLITLRVKDSEGVRITRTMRTTDALDDLMDFYLGMVPADMDAAEGVFMHYGRRVTGDR 80
A +TL+V+ ++G + RTM T+ L LMDFY + G F+ GRR+ G +
Sbjct: 35 AGEYVTLKVQGTDGRAVYRTMLRTEELQGLMDFYYDRSHGRVQRGTGRFLFDGRRLRGWQ 94
Query: 81 TPADYDMEDGDEVSFFPD 98
TPA+ MEDGDEV+FF +
Sbjct: 95 TPAELQMEDGDEVNFFEE 112
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,984,766
Number of extensions: 450241
Number of successful extensions: 851
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 8
Length of query: 327
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 226
Effective length of database: 11,762,187
Effective search space: 2658254262
Effective search space used: 2658254262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)