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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0574500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ubiquitin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0228) R2 : 5.18e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00233 (0.0479) R2dN8 : 6.69e-06 R2N8 : 5.18e-06
σ : 0.428
deviance : 84.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.37 0.424 2.9 0.0981 0.124 0.187 0.171 0.366 -0.016 3.84 32.4 1132 -- --
81.54 0.421 2.9 0.0727 0.134 0.21 0.198 -- -0.0277 3.88 35 1081 -- --
81.37 0.42 2.9 0.0936 0.137 0.2 -- 0.397 -0.0136 3.79 35.41 1081 -- --
81.64 0.421 2.9 0.0621 0.135 0.209 -- -- -0.0177 3.94 35.16 1081 -- --
82.31 0.423 2.9 0.106 -- 0.2 -- 0.402 -0.0125 -- 34.66 1127 -- --
82.84 0.427 2.89 0.0829 0.139 -- 0.165 -- 0.00458 2.34 -- -- -- --
82.94 0.426 2.9 0.0783 0.139 -- -- -- 0.00364 2.27 -- -- -- --
82.57 0.423 2.9 0.0763 -- 0.218 -- -- -0.0272 -- 35.34 1127 -- --
81.74 0.421 2.9 -- 0.133 0.222 -- -- -0.0324 3.96 34.67 1081 -- --
84.09 0.428 2.89 0.0842 -- -- -- -- 0.00701 -- -- -- -- --
83.1 0.426 2.9 -- 0.14 -- -- -- -0.00509 2.29 -- -- -- --
82.65 0.423 2.91 -- -- 0.213 -- -- -0.043 -- 28.1 1174 -- --
84.28 0.428 2.9 -- -- -- -- -- -0.00233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.13 temperature 20.0 10 > th dose dependent rect. 3 1
2 78.19 temperature 20.0 10 > th dose dependent rect. 23 5
5 78.39 radiation 1.0 43200 < th dose dependent rect. 3 1
7 78.45 wind 7.0 1440 < th dose independent rect. 3 1
15 78.48 temperature 25.0 10 > th dose independent rect. 23 1
21 78.49 temperature 10.0 1440 > th dose independent rect. 3 1
24 78.49 temperature 30.0 1440 < th dose independent rect. 3 1
28 78.49 humidity 50.0 1440 > th dose independent rect. 3 1
37 78.49 atmosphere 995.0 1440 > th dose independent rect. 3 1
38 78.49 radiation 1.0 1440 < th dose independent rect. 3 1
58 78.49 temperature 10.0 1440 > th dose independent rect. 4 23
68 78.50 temperature 25.0 90 > th dose independent rect. 23 1
71 78.52 atmosphere 1005.0 10 > th dose independent rect. 2 2
76 78.65 temperature 20.0 10 > th dose independent rect. 2 2
78 78.74 humidity 90.0 10 > th dose dependent rect. 2 2
83 78.88 atmosphere 1015.0 1440 < th dose independent rect. 3 1
95 79.27 humidity 90.0 90 > th dose independent rect. 2 1
96 79.30 humidity 90.0 90 > th dose dependent rect. 2 1
105 79.45 wind 3.0 10 < th dose dependent rect. 2 2
109 79.52 humidity 90.0 10 > th dose independent rect. 2 2
131 79.72 temperature 25.0 720 > th dose independent rect. 16 8
132 79.72 atmosphere 995.0 10 > th dose dependent rect. 2 2
134 79.74 temperature 20.0 270 > th dose dependent rect. 23 1
145 79.82 temperature 25.0 270 > th dose independent rect. 20 4
149 79.85 wind 3.0 10 < th dose independent rect. 2 2
150 79.85 temperature 25.0 10 < th dose independent rect. 2 2
151 79.86 precipitation 0.1 10 < th dose independent rect. 2 2
154 79.86 precipitation 0.1 10 < th dose dependent rect. 2 2
155 79.89 wind 7.0 10 < th dose independent rect. 4 22
162 79.92 temperature 25.0 10 > th dose dependent rect. 23 2
174 80.01 wind 1.0 10 > th dose independent rect. 2 2
178 80.03 temperature 25.0 90 < th dose independent rect. 2 1
186 80.05 temperature 25.0 30 > th dose independent rect. 23 6
187 80.06 wind 1.0 90 > th dose independent rect. 2 1
190 80.07 radiation 10.0 720 > th dose independent rect. 16 1
200 80.09 temperature 25.0 720 < th dose independent rect. 17 6
203 80.10 temperature 10.0 10 > th dose independent rect. 2 2
206 80.10 humidity 50.0 10 > th dose independent rect. 2 2
210 80.10 atmosphere 1010.0 10 < th dose independent rect. 2 2
212 80.10 radiation 1.0 10 < th dose independent rect. 2 2
218 80.10 temperature 10.0 10 > th dose independent rect. 4 22
221 80.10 radiation 1.0 10 < th dose dependent rect. 2 2
250 80.20 temperature 25.0 720 < th dose independent rect. 19 4
267 80.24 temperature 20.0 10 > th dose independent rect. 12 16
269 80.24 radiation 10.0 720 > th dose dependent rect. 16 1
307 80.28 precipitation 0.1 10 < th dose independent rect. 4 22
313 80.28 precipitation 0.1 10 < th dose dependent rect. 4 22
321 80.30 atmosphere 995.0 10 > th dose independent rect. 4 22
340 80.33 temperature 10.0 720 > th dose dependent rect. 16 8
502 80.57 temperature 25.0 720 > th dose independent sin 16 NA
505 80.57 humidity 50.0 720 < th dose independent rect. 16 1
523 80.58 humidity 50.0 720 < th dose dependent rect. 16 1
525 80.58 wind 9.0 10 < th dose dependent rect. 4 22
555 80.61 humidity 80.0 4320 < th dose dependent rect. 5 1
585 80.64 radiation 10.0 720 < th dose independent rect. 16 9
613 80.68 temperature 25.0 720 < th dose independent sin 16 NA
616 80.68 wind 3.0 30 < th dose independent rect. 22 6
680 80.72 radiation 20.0 720 < th dose dependent rect. 16 9
695 80.74 temperature 10.0 10 > th dose dependent rect. 12 16
702 80.75 temperature 25.0 720 > th dose dependent rect. 16 1
724 80.78 wind 7.0 10 < th dose independent rect. 4 8
728 80.78 precipitation 0.1 10 < th dose independent rect. 12 16
732 80.78 precipitation 0.1 10 < th dose dependent rect. 12 16
742 80.80 temperature 20.0 10 > th dose independent rect. 15 13
758 80.81 temperature 30.0 720 < th dose dependent rect. 16 6
761 80.82 humidity 80.0 4320 < th dose independent rect. 5 1
794 80.85 humidity 80.0 4320 > th dose independent rect. 5 1
800 80.85 atmosphere 1015.0 10 < th dose independent rect. 12 16
801 80.85 atmosphere 1015.0 10 < th dose independent rect. 4 22
816 80.86 temperature 30.0 720 < th dose dependent rect. 19 2
831 80.87 radiation 40.0 10 < th dose dependent rect. 4 22
858 80.89 temperature 30.0 14400 > th dose dependent rect. 18 15
864 80.90 wind 3.0 30 < th dose independent rect. 19 9
869 80.90 radiation 40.0 10 < th dose independent rect. 4 22
895 80.92 temperature 10.0 10 > th dose independent rect. 4 8
897 80.92 atmosphere 995.0 10 > th dose independent rect. 4 8
898 80.92 atmosphere 1015.0 10 < th dose independent rect. 4 8
900 80.92 wind 1.0 90 > th dose independent rect. 12 16
901 80.92 temperature 10.0 10 > th dose independent rect. 12 16
941 80.95 temperature 20.0 10 > th dose independent rect. 9 19
942 80.95 temperature 30.0 14400 > th dose dependent rect. 18 1
961 80.95 radiation 20.0 30 < th dose dependent rect. 4 22
964 80.96 precipitation 0.1 10 < th dose independent rect. 4 8
968 80.96 wind 9.0 10 < th dose independent rect. 12 16
971 80.96 radiation 10.0 30 < th dose independent rect. 4 22
978 80.96 precipitation 0.1 10 < th dose dependent rect. 4 8
992 80.97 wind 9.0 10 < th dose dependent rect. 4 8