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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0574600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0218) R2 : 0.00856
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.091 (0.0459) R2dN8 : 0.011 R2N8 : 0.00856
σ : 0.41
deviance : 77.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.69 0.392 3.3 0.121 0.243 0.109 -0.373 0.966 0.1 6.64 40 10 -- --
72.83 0.397 3.3 0.151 0.246 0.134 -0.297 -- 0.108 6.17 38.79 9 -- --
71.03 0.393 3.3 0.112 0.243 0.113 -- 0.931 0.101 6.52 40.18 10 -- --
73.03 0.398 3.3 0.147 0.244 0.125 -- -- 0.107 6.46 38.79 9 -- --
74.07 0.401 3.31 0.123 -- 0.124 -- 0.933 0.107 -- 40.18 10 -- --
73.35 0.402 3.3 0.146 0.251 -- -0.224 -- 0.102 6.84 -- -- -- --
73.47 0.401 3.3 0.143 0.25 -- -- -- 0.103 7.07 -- -- -- --
76.16 0.406 3.31 0.152 -- 0.132 -- -- 0.111 -- 38.9 9 -- --
73.59 0.4 3.31 -- 0.247 0.12 -- -- 0.0894 6.45 38.81 9 -- --
76.77 0.409 3.31 0.148 -- -- -- -- 0.107 -- -- -- -- --
74.01 0.402 3.31 -- 0.252 -- -- -- 0.087 7.03 -- -- -- --
76.77 0.408 3.31 -- -- 0.128 -- -- 0.0942 -- 38.97 9 -- --
77.35 0.41 3.31 -- -- -- -- -- 0.091 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.25 atmosphere 995.0 30 > th dose independent rect. 3 23
3 64.66 atmosphere 1010.0 30 < th dose dependent rect. 2 1
5 64.85 wind 1.0 30 < th dose dependent rect. 2 1
6 64.87 wind 1.0 10 < th dose independent rect. 2 1
8 64.90 temperature 15.0 30 > th dose independent rect. 3 23
20 64.95 temperature 30.0 30 < th dose dependent rect. 2 1
22 64.96 temperature 10.0 30 > th dose independent rect. 2 1
24 64.96 temperature 25.0 30 < th dose independent rect. 2 1
26 64.96 humidity 50.0 30 > th dose independent rect. 2 1
29 64.96 atmosphere 995.0 30 > th dose independent rect. 2 1
30 64.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
32 64.96 radiation 1.0 30 < th dose independent rect. 2 1
37 64.96 precipitation 0.1 30 < th dose independent rect. 2 1
39 64.96 radiation 1.0 30 < th dose dependent rect. 2 1
44 64.96 precipitation 0.1 30 < th dose dependent rect. 2 1
46 64.97 humidity 50.0 30 > th dose dependent rect. 2 1
47 64.98 temperature 10.0 30 > th dose dependent rect. 2 1
50 64.98 atmosphere 1005.0 10 > th dose dependent rect. 2 1
90 65.06 atmosphere 995.0 30 > th dose dependent rect. 2 1
94 65.10 atmosphere 1005.0 30 > th dose independent rect. 2 1
99 65.14 wind 1.0 30 > th dose independent rect. 2 1
102 65.21 wind 9.0 30 < th dose independent rect. 3 23
118 65.97 precipitation 0.1 30 < th dose independent rect. 3 23
119 65.97 precipitation 0.1 30 < th dose dependent rect. 3 23
127 66.42 atmosphere 995.0 720 > th dose independent rect. 23 16
130 66.68 radiation 1.0 43200 < th dose dependent rect. 3 1
133 66.92 radiation 1.0 4320 < th dose dependent rect. 3 1
137 66.95 wind 9.0 1440 < th dose independent rect. 3 1
138 66.95 temperature 10.0 1440 > th dose independent rect. 3 1
141 66.95 temperature 30.0 1440 < th dose independent rect. 3 1
145 66.95 humidity 50.0 1440 > th dose independent rect. 3 1
154 66.95 atmosphere 995.0 1440 > th dose independent rect. 3 1
155 66.95 radiation 1.0 1440 < th dose independent rect. 3 1
175 66.95 temperature 10.0 1440 > th dose independent rect. 4 23
195 67.21 humidity 50.0 30 > th dose independent rect. 3 23
197 67.24 temperature 10.0 720 > th dose independent rect. 15 8
198 67.24 temperature 10.0 720 > th dose independent rect. 23 16
200 67.37 temperature 10.0 720 > th dose independent rect. 3 8
201 67.37 atmosphere 995.0 720 > th dose independent rect. 3 8
202 67.37 temperature 10.0 720 > th dose independent rect. 11 16
203 67.38 radiation 10.0 30 > th dose independent rect. 7 1
207 67.53 wind 9.0 720 < th dose independent rect. 3 8
210 67.60 humidity 80.0 10 < th dose independent rect. 7 1
215 67.70 precipitation 0.1 720 < th dose independent rect. 15 8
216 67.70 precipitation 0.1 720 < th dose dependent rect. 15 8
220 67.86 humidity 90.0 90 < th dose independent rect. 1 7
221 67.86 humidity 50.0 720 > th dose independent rect. 3 8
224 67.89 atmosphere 995.0 720 > th dose independent rect. 7 8
225 67.90 humidity 90.0 90 < th dose independent rect. 2 1
226 67.96 humidity 80.0 10 < th dose independent rect. 23 9
235 68.03 atmosphere 1015.0 720 < th dose independent rect. 3 8
237 68.12 radiation 10.0 30 < th dose dependent rect. 3 23
241 68.20 wind 9.0 720 < th dose independent rect. 19 8
282 68.32 precipitation 0.1 720 < th dose independent rect. 11 16
283 68.32 precipitation 0.1 720 < th dose dependent rect. 11 16
287 68.49 temperature 10.0 720 > th dose independent rect. 19 8
288 68.49 temperature 30.0 720 < th dose independent rect. 19 8
289 68.49 humidity 50.0 720 > th dose independent rect. 19 8
290 68.49 atmosphere 995.0 720 > th dose independent rect. 19 8
291 68.49 radiation 1.0 720 < th dose independent rect. 19 8
296 68.49 temperature 10.0 720 > th dose independent rect. 3 16
297 68.49 radiation 1.0 720 < th dose dependent rect. 19 8
302 68.50 temperature 10.0 720 > th dose independent rect. 7 8
303 68.50 atmosphere 1015.0 720 < th dose independent rect. 7 8
304 68.50 radiation 40.0 720 < th dose independent rect. 15 8
305 68.50 temperature 10.0 720 > th dose independent rect. 15 16
306 68.53 wind 9.0 720 < th dose independent rect. 15 8
308 68.59 atmosphere 1015.0 720 < th dose independent rect. 3 16
309 68.59 radiation 40.0 10 < th dose independent rect. 3 23
310 68.64 radiation 10.0 10 > th dose independent rect. 16 16
317 68.73 wind 9.0 720 < th dose independent rect. 15 16
325 68.83 precipitation 0.1 720 < th dose independent rect. 19 8
327 68.83 precipitation 0.1 720 < th dose dependent rect. 19 8
334 68.89 radiation 40.0 720 < th dose independent rect. 15 16
335 68.90 precipitation 0.1 720 < th dose independent rect. 3 8
336 68.90 precipitation 0.1 720 < th dose dependent rect. 3 8
345 69.02 precipitation 0.1 720 < th dose independent rect. 7 8
346 69.02 precipitation 0.1 720 < th dose dependent rect. 7 8
352 69.07 radiation 10.0 30 < th dose independent rect. 3 23
356 69.09 precipitation 0.1 720 < th dose independent rect. 23 16
357 69.09 precipitation 0.1 720 < th dose dependent rect. 23 16
373 69.26 humidity 80.0 14400 < th dose dependent rect. 3 6
393 69.32 humidity 70.0 14400 > th dose independent rect. 8 1
394 69.32 precipitation 0.1 720 < th dose independent rect. 15 16
396 69.32 precipitation 0.1 720 < th dose dependent rect. 15 16
397 69.33 atmosphere 1015.0 30 < th dose independent rect. 3 23
402 69.35 radiation 40.0 30 < th dose dependent rect. 3 23
403 69.38 temperature 25.0 10 > th dose independent rect. 7 1
406 69.39 atmosphere 995.0 720 > th dose independent rect. 15 8
417 69.48 humidity 70.0 14400 < th dose independent rect. 8 1
424 69.54 atmosphere 995.0 720 > th dose independent rect. 3 16
433 69.61 humidity 70.0 14400 > th dose independent rect. 4 5
434 69.61 humidity 70.0 14400 > th dose independent rect. 24 9
435 69.61 humidity 90.0 90 < th dose independent rect. 1 22
450 69.66 wind 1.0 14400 < th dose dependent rect. 4 3
457 69.72 temperature 20.0 90 > th dose independent rect. 3 3
461 69.75 temperature 10.0 30 > th dose dependent rect. 3 23
468 69.80 radiation 40.0 10 < th dose independent rect. 3 9
469 69.80 radiation 40.0 10 < th dose independent rect. 3 12
470 69.80 wind 9.0 720 < th dose independent rect. 23 16
508 69.85 humidity 80.0 14400 < th dose dependent rect. 23 11
510 69.86 wind 1.0 14400 < th dose independent rect. 4 3
511 69.87 wind 1.0 14400 > th dose independent rect. 4 3
512 69.87 temperature 25.0 720 > th dose dependent rect. 8 1
537 69.93 wind 1.0 30 > th dose dependent rect. 2 1
539 69.94 humidity 50.0 14400 > th dose independent rect. 15 1
542 69.94 temperature 25.0 720 > th dose dependent rect. 3 6
544 69.95 wind 1.0 14400 < th dose dependent rect. 6 1
547 69.97 wind 1.0 14400 < th dose dependent rect. 2 1
554 70.01 temperature 25.0 720 > th dose dependent rect. 6 3
557 70.02 atmosphere 995.0 720 > th dose independent rect. 15 16
560 70.02 wind 1.0 14400 < th dose dependent rect. 2 5
565 70.04 humidity 90.0 90 < th dose dependent rect. 2 5
571 70.05 temperature 30.0 30 < th dose independent rect. 3 23
574 70.05 humidity 50.0 30 > th dose dependent rect. 3 23
581 70.07 wind 9.0 720 < th dose independent rect. 7 8
583 70.07 wind 1.0 10 < th dose independent rect. 11 16
587 70.07 humidity 90.0 90 < th dose dependent rect. 1 7
591 70.08 wind 1.0 10 > th dose independent rect. 8 23
595 70.09 temperature 25.0 720 > th dose independent rect. 8 1
598 70.10 atmosphere 1000.0 30 > th dose independent rect. 23 23
612 70.13 atmosphere 1000.0 10 > th dose independent rect. 8 23
614 70.14 temperature 25.0 270 > th dose independent rect. 19 8
618 70.15 atmosphere 995.0 30 > th dose dependent rect. 3 23
621 70.17 wind 1.0 14400 < th dose independent rect. 6 1
627 70.18 wind 1.0 14400 > th dose independent rect. 1 2
628 70.18 wind 9.0 720 < th dose independent rect. 11 16
633 70.19 humidity 90.0 90 < th dose independent rect. 1 15
635 70.20 temperature 25.0 270 > th dose independent rect. 22 5
637 70.20 wind 1.0 10 < th dose independent rect. 17 10
640 70.20 wind 1.0 10 < th dose independent rect. 6 21
643 70.20 humidity 70.0 30 > th dose dependent rect. 3 23
653 70.22 atmosphere 1015.0 90 < th dose independent rect. 6 21
654 70.22 radiation 40.0 10 > th dose independent rect. 14 22
659 70.23 atmosphere 1015.0 1440 < th dose independent rect. 3 1
663 70.24 humidity 60.0 14400 < th dose dependent rect. 12 1
665 70.24 wind 3.0 30 < th dose dependent rect. 2 6
669 70.25 radiation 40.0 10 > th dose independent rect. 9 3
674 70.25 radiation 1.0 720 > th dose independent rect. 8 7
690 70.25 humidity 90.0 10 < th dose dependent rect. 7 1
692 70.26 temperature 25.0 270 > th dose independent rect. 19 11
706 70.28 radiation 40.0 30 < th dose dependent rect. 3 10
712 70.30 wind 1.0 10 < th dose independent rect. 8 19
714 70.30 humidity 70.0 720 > th dose dependent rect. 3 1
716 70.31 humidity 60.0 14400 < th dose independent rect. 10 2
723 70.32 humidity 60.0 14400 < th dose dependent rect. 12 4
728 70.33 humidity 50.0 720 > th dose independent rect. 23 16
733 70.35 radiation 40.0 10 > th dose independent sin 7 NA
737 70.35 wind 1.0 14400 < th dose dependent rect. 4 7
754 70.36 radiation 40.0 10 < th dose independent rect. 8 22
755 70.36 radiation 40.0 10 < th dose independent rect. 10 22
756 70.36 radiation 40.0 10 < th dose independent rect. 23 23
770 70.38 radiation 40.0 10 < th dose independent rect. 10 20
781 70.39 wind 1.0 14400 < th dose independent rect. 2 6
782 70.39 humidity 60.0 14400 < th dose dependent rect. 14 2
783 70.39 humidity 80.0 90 > th dose dependent rect. 3 3
804 70.40 wind 1.0 14400 < th dose independent rect. 4 7
810 70.40 precipitation 0.1 720 < th dose independent rect. 3 16
829 70.40 precipitation 0.1 720 < th dose dependent rect. 3 16
842 70.41 wind 1.0 14400 < th dose dependent rect. 2 9
854 70.43 wind 1.0 14400 > th dose independent rect. 4 7
859 70.43 wind 3.0 30 < th dose dependent rect. 6 21
868 70.44 wind 3.0 30 < th dose dependent rect. 22 5
876 70.45 atmosphere 1000.0 10 > th dose independent rect. 16 10
877 70.45 precipitation 0.1 14400 > th dose independent rect. 24 10
888 70.46 wind 1.0 14400 > th dose independent rect. 2 6
892 70.46 precipitation 0.1 14400 < th dose independent rect. 24 11
894 70.46 temperature 20.0 720 > th dose dependent rect. 3 1
897 70.46 radiation 10.0 90 < th dose dependent rect. 3 7
899 70.46 precipitation 0.1 14400 < th dose dependent rect. 24 11
901 70.46 wind 9.0 90 < th dose dependent rect. 6 21
902 70.47 wind 1.0 10 > th dose independent rect. 23 7
920 70.47 radiation 40.0 90 < th dose dependent rect. 13 14
933 70.48 temperature 10.0 720 > th dose dependent rect. 3 1
942 70.49 radiation 1.0 90 < th dose independent rect. 3 5
946 70.49 radiation 1.0 90 < th dose independent rect. 3 9
957 70.50 wind 1.0 14400 < th dose independent rect. 2 1
958 70.50 precipitation 0.1 4320 < th dose independent rect. 23 1
967 70.50 precipitation 0.1 4320 < th dose dependent rect. 23 1
972 70.50 radiation 40.0 30 < th dose dependent rect. 3 12
976 70.51 humidity 80.0 90 > th dose independent rect. 3 3
978 70.51 temperature 25.0 90 < th dose independent rect. 21 9
994 70.52 precipitation 0.1 14400 > th dose dependent rect. 24 10
1000 70.53 atmosphere 995.0 90 > th dose independent rect. 3 16