BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0572400 Os07g0572400|AK067317
         (90 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0572400  Conserved hypothetical protein                      162   4e-41
Os03g0806800  Conserved hypothetical protein                       84   2e-17
Os07g0204400  Conserved hypothetical protein                       77   3e-15

>Os07g0572400 Conserved hypothetical protein
          Length = 90

 Score =  162 bits (411), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 81/90 (90%)

Query: 1  MHGKVNSGCRGRRVVVAGTMGWLQSLLAPLKKLWIRMHSAQRKKRGIYILYEDVKSCPCE 60
          MHGKVNSGCRGRRVVVAGTMGWLQSLLAPLKKLWIRMHSAQRKKRGIYILYEDVKSCPCE
Sbjct: 1  MHGKVNSGCRGRRVVVAGTMGWLQSLLAPLKKLWIRMHSAQRKKRGIYILYEDVKSCPCE 60

Query: 61 DVQILWSILVESSXXXXXXXXXPQPLRLKQ 90
          DVQILWSILVESS         PQPLRLKQ
Sbjct: 61 DVQILWSILVESSHGGGHHHHHPQPLRLKQ 90



>Os03g0806800 Conserved hypothetical protein
          Length = 64

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 46/53 (86%)

Query: 20 MGWLQSLLAPLKKLWIRMHSAQRKKRGIYILYEDVKSCPCEDVQILWSILVES 72
          MGWL SL +PL+KLW+R HSA+R +RG++ILY+DVKSC  EDV +LWSILV+S
Sbjct: 1  MGWLHSLFSPLRKLWVRAHSARRNRRGMHILYKDVKSCQDEDVHVLWSILVDS 53



>Os07g0204400 Conserved hypothetical protein
          Length = 64

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 44/53 (83%)

Query: 20 MGWLQSLLAPLKKLWIRMHSAQRKKRGIYILYEDVKSCPCEDVQILWSILVES 72
          MGWL SL +PL++LW+  HS +R +RG+YILY+DV+SC  EDV +LWSIL++S
Sbjct: 1  MGWLHSLFSPLRRLWVCAHSERRNRRGMYILYKDVQSCQDEDVHVLWSILIDS 53



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,721,453
Number of extensions: 79369
Number of successful extensions: 258
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 3
Length of query: 90
Length of database: 17,035,801
Length adjustment: 60
Effective length of query: 30
Effective length of database: 13,902,961
Effective search space: 417088830
Effective search space used: 417088830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 149 (62.0 bits)