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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0572400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.34 (0.0747) R2 : 0.615
β1 : -5.67 (0.274) R2dD : 0.382 R2D : 0.303
β2 : 1.48 (0.221) R2dC : 0.055 R2C : -0.0874
β3 : 4.39 (0.25) R2dE : 0.352 R2E : 0.171
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.836 (0.16) R2dN8 : 0.0345 R2N8 : 0.00265
σ : 1.4
deviance : 899.8
__
_____
C
peak time of C : 15.6
E
wheather : humidity
threshold : 86.7
memory length : 861
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 5.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
892.08 1.4 7.32 -5.32 1.67 4.21 -1.77 2.58 -0.831 16.2 87.83 806 16.5 6.51
890.7 1.39 7.32 -5.42 1.62 4.37 -2.7 -- -0.775 16 87.14 837 16.1 6.67
889.63 1.39 7.29 -5.27 1.54 4.28 -- 3.2 -0.792 15.8 86.97 843 15.9 6.59
899.8 1.4 7.34 -5.67 1.48 4.39 -- -- -0.836 15.6 86.7 861 15.9 5.4
948.24 1.43 7.25 -5.53 -- 3.47 -- 3.31 -0.697 -- 80.84 837 15.9 5.35
1431.17 1.77 7.39 -5.55 1.14 -- 0.468 -- -1.09 23.2 -- -- -- --
1431.92 1.77 7.39 -5.56 1.14 -- -- -- -1.09 23 -- -- -- --
960.68 1.44 7.26 -5.68 -- 3.7 -- -- -0.607 -- 79.85 845 15.7 5.66
1348.82 1.71 7.25 -- 0.599 6.43 -- -- -1.03 18.1 88.34 29344 14.8 5.06
1512.34 1.82 7.36 -5.54 -- -- -- -- -1.08 -- -- -- -- --
2247.89 2.22 7.25 -- 1.09 -- -- -- -0.47 22.6 -- -- -- --
1253.13 1.65 7.33 -- -- 6.66 -- -- -1.36 -- 89.45 29324 16.2 1.9
2321.62 2.25 7.23 -- -- -- -- -- -0.467 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 954.91 humidity 90 720 < th dose dependent rect. 17 6
2 955.34 humidity 80 720 < th dose dependent rect. 18 3
14 969.75 humidity 80 720 < th dose dependent rect. 17 15
18 972.11 temperature 25 720 > th dose dependent rect. 17 6
21 973.29 humidity 70 720 > th dose independent sin 12 NA
35 978.07 temperature 25 720 > th dose dependent rect. 17 15
48 981.01 radiation 20 1440 > th dose independent rect. 16 15
65 984.00 humidity 70 720 < th dose independent rect. 18 13
66 984.11 humidity 70 720 < th dose independent rect. 18 2
98 988.08 humidity 80 1440 < th dose dependent sin 13 NA
106 989.85 radiation 10 1440 < th dose dependent rect. 18 9
110 991.69 radiation 20 1440 < th dose independent rect. 16 15
112 991.86 humidity 70 720 < th dose independent sin 12 NA
136 994.79 humidity 70 14400 > th dose independent rect. 19 12
142 995.82 temperature 25 720 > th dose dependent rect. 18 1
143 995.86 humidity 70 14400 > th dose independent rect. 19 8
147 996.07 humidity 70 14400 > th dose independent rect. 19 6
159 996.88 temperature 30 1440 > th dose dependent sin 12 NA
164 997.26 radiation 20 1440 > th dose dependent rect. 16 16
171 997.96 humidity 50 720 > th dose dependent rect. 17 8
176 998.32 radiation 10 1440 < th dose dependent rect. 18 7
178 998.54 radiation 20 14400 > th dose dependent rect. 16 15
182 998.90 temperature 30 1440 > th dose dependent rect. 15 4
262 1001.66 humidity 50 1440 > th dose dependent rect. 15 6
267 1002.09 humidity 70 14400 < th dose independent rect. 19 12
278 1002.78 radiation 1 1440 > th dose dependent rect. 18 12
279 1002.81 humidity 70 720 > th dose independent rect. 16 15
289 1003.35 humidity 70 720 > th dose independent rect. 18 8
301 1004.35 humidity 70 14400 < th dose independent rect. 19 1
320 1004.64 radiation 20 1440 < th dose independent rect. 16 11
326 1004.83 radiation 20 1440 < th dose independent rect. 16 1
336 1005.32 radiation 30 1440 < th dose dependent rect. 16 14
363 1005.89 radiation 20 1440 < th dose independent rect. 16 9
395 1006.42 humidity 60 720 > th dose dependent rect. 17 6
398 1006.52 temperature 30 1440 > th dose independent rect. 17 2
419 1006.82 radiation 20 1440 > th dose independent rect. 16 1
437 1006.99 radiation 10 1440 < th dose dependent rect. 18 12
443 1007.15 radiation 10 1440 < th dose dependent rect. 18 1
454 1007.59 humidity 70 14400 < th dose independent rect. 19 3
473 1008.10 humidity 70 1440 > th dose independent rect. 18 13
486 1008.40 humidity 70 1440 > th dose independent rect. 18 3
490 1008.52 temperature 30 1440 < th dose independent sin 12 NA
498 1008.67 humidity 70 1440 > th dose independent rect. 18 5
514 1008.74 temperature 30 1440 > th dose independent sin 12 NA
524 1008.92 humidity 70 720 > th dose independent rect. 16 10
528 1009.22 humidity 50 1440 > th dose dependent rect. 11 12
529 1009.26 humidity 50 1440 > th dose dependent sin 19 NA
532 1009.41 radiation 40 1440 < th dose dependent rect. 16 11
541 1009.53 humidity 50 1440 > th dose dependent rect. 6 17
575 1010.48 radiation 40 1440 < th dose dependent rect. 16 9
622 1011.40 radiation 20 14400 > th dose dependent rect. 16 2
652 1011.83 humidity 90 1440 < th dose dependent rect. 4 19
681 1012.21 radiation 40 1440 < th dose dependent rect. 16 3
696 1012.63 temperature 30 1440 < th dose independent rect. 17 10
708 1012.83 temperature 30 1440 < th dose independent rect. 17 8
713 1012.92 temperature 30 1440 < th dose independent rect. 17 3
718 1012.95 humidity 50 1440 > th dose dependent rect. 16 1
770 1013.40 radiation 10 1440 > th dose independent sin 13 NA
791 1013.79 humidity 90 1440 < th dose dependent rect. 11 12
928 1015.90 radiation 1 1440 > th dose dependent rect. 4 2
997 1016.97 temperature 30 1440 > th dose dependent no NA NA