BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0571500 Os07g0571500|J033127C11
         (84 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0571500  Conserved hypothetical protein                      169   4e-43
AK105438                                                           86   7e-18
Os01g0778700  Conserved hypothetical protein                       78   2e-15

>Os07g0571500 Conserved hypothetical protein
          Length = 84

 Score =  169 bits (428), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  VPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQVCYLKILLQSIFFSVSSMHCN 60
          VPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQVCYLKILLQSIFFSVSSMHCN
Sbjct: 1  VPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQVCYLKILLQSIFFSVSSMHCN 60

Query: 61 IFVKLSNHTSQITSVDNISNYSLQ 84
          IFVKLSNHTSQITSVDNISNYSLQ
Sbjct: 61 IFVKLSNHTSQITSVDNISNYSLQ 84



>AK105438 
          Length = 426

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/39 (100%), Positives = 39/39 (100%)

Query: 1   VPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQ 39
           VPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQ
Sbjct: 263 VPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQ 301



>Os01g0778700 Conserved hypothetical protein
          Length = 438

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 38/43 (88%)

Query: 1   VPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQVCYL 43
           VPNPLFDLAGI+CGQF IPFW+FF ATLIGKA+IK +IQ  ++
Sbjct: 279 VPNPLFDLAGIMCGQFGIPFWEFFFATLIGKAIIKTHIQTLFI 321



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,271,335
Number of extensions: 61873
Number of successful extensions: 142
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 3
Length of query: 84
Length of database: 17,035,801
Length adjustment: 54
Effective length of query: 30
Effective length of database: 14,216,245
Effective search space: 426487350
Effective search space used: 426487350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)