Os01g0778700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0778700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.47 | 0.223 | 11 | 0.117 | 0.484 | -0.305 | -0.229 | 0.235 | 0.189 | 5.91 | 25.2 | 258 | -- | -- |
| 22.6 | 0.221 | 11 | 0.0563 | 0.489 | -0.286 | -0.3 | -- | 0.158 | 5.89 | 25.2 | 251 | -- | -- |
| 22.57 | 0.221 | 11 | 0.137 | 0.486 | -0.304 | -- | 0.325 | 0.195 | 5.85 | 25.3 | 254 | -- | -- |
| 22.84 | 0.223 | 11 | 0.0457 | 0.493 | -0.282 | -- | -- | 0.16 | 5.91 | 25.35 | 234 | -- | -- |
| 30.03 | 0.255 | 10.9 | 0.247 | -- | -0.555 | -- | 0.469 | 0.301 | -- | 25.6 | 274 | -- | -- |
| 26.62 | 0.242 | 11 | -0.0358 | 0.703 | -- | -0.21 | -- | 0.0364 | 5.62 | -- | -- | -- | -- |
| 26.72 | 0.242 | 11 | -0.0369 | 0.702 | -- | -- | -- | 0.0372 | 5.59 | -- | -- | -- | -- |
| 30.58 | 0.258 | 11 | 0.128 | -- | -0.528 | -- | -- | 0.258 | -- | 25.7 | 260 | -- | -- |
| 22.8 | 0.222 | 11 | -- | 0.493 | -0.279 | -- | -- | 0.15 | 5.92 | 25.55 | 228 | -- | -- |
| 52.3 | 0.338 | 11 | -0.0142 | -- | -- | -- | -- | 0.0542 | -- | -- | -- | -- | -- |
| 26.76 | 0.242 | 11 | -- | 0.701 | -- | -- | -- | 0.0413 | 5.59 | -- | -- | -- | -- |
| 30.96 | 0.259 | 11 | -- | -- | -0.52 | -- | -- | 0.241 | -- | 25.69 | 260 | -- | -- |
| 52.3 | 0.338 | 11 | -- | -- | -- | -- | -- | 0.0557 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.83 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 3 | 20.23 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 16 | 20.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 72 | 21.65 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 86 | 21.70 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 94 | 21.75 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 9 | 3 |
| 105 | 21.79 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 124 | 21.90 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 20 |
| 132 | 21.94 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 139 | 21.96 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 152 | 22.03 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 156 | 22.04 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 177 | 22.09 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 185 | 22.11 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 189 | 22.12 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 197 | 22.15 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 204 | 22.17 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 215 | 22.19 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 221 | 22.21 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 230 | 22.23 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 234 | 22.24 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 20 |
| 240 | 22.25 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 245 | 22.25 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 246 | 22.26 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 249 | 22.26 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 250 | 22.26 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 251 | 22.26 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 264 | 22.28 | temperature | 25.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 267 | 22.28 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 274 | 22.30 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 280 | 22.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 284 | 22.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 285 | 22.33 | radiation | 1.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 307 | 22.37 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 9 | 5 |
| 311 | 22.38 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 21 |
| 322 | 22.40 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 324 | 22.41 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 325 | 22.41 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 326 | 22.41 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 327 | 22.41 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 335 | 22.43 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 13 |
| 353 | 22.47 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 355 | 22.47 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 5 |
| 365 | 22.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 13 |
| 367 | 22.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 369 | 22.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 380 | 22.50 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 389 | 22.51 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 391 | 22.52 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 20 |
| 399 | 22.52 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 404 | 22.53 | temperature | 20.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 419 | 22.55 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 431 | 22.57 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 434 | 22.57 | temperature | 10.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 454 | 22.59 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 461 | 22.60 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 15 |
| 471 | 22.61 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 483 | 22.62 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 485 | 22.62 | humidity | 90.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 486 | 22.62 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 19 |
| 490 | 22.62 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 494 | 22.63 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 495 | 22.63 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 7 |
| 496 | 22.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 11 |
| 498 | 22.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 508 | 22.64 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 511 | 22.64 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 512 | 22.64 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 518 | 22.65 | wind | 5.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 532 | 22.66 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 534 | 22.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 547 | 22.67 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 549 | 22.67 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 550 | 22.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 553 | 22.67 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 554 | 22.67 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 555 | 22.67 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 558 | 22.67 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 559 | 22.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 568 | 22.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 569 | 22.67 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 607 | 22.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 609 | 22.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 614 | 22.73 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 616 | 22.73 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 631 | 22.74 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 638 | 22.74 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 641 | 22.75 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 643 | 22.75 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 645 | 22.75 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 646 | 22.75 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 654 | 22.76 | temperature | 25.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 655 | 22.76 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 5 |
| 659 | 22.76 | temperature | 25.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 660 | 22.76 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 663 | 22.76 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 682 | 22.77 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 22 |
| 704 | 22.79 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 706 | 22.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 11 |
| 712 | 22.79 | temperature | 30.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 721 | 22.80 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 3 |
| 748 | 22.81 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 753 | 22.82 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 768 | 22.83 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 827 | 22.86 | temperature | 25.0 | 90 | > th | dose independent | rect. | 9 | 3 |
| 846 | 22.87 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 23 |
| 848 | 22.87 | radiation | 1.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 879 | 22.89 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 880 | 22.89 | humidity | 90.0 | 30 | < th | dose independent | rect. | 9 | 5 |
| 887 | 22.89 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 890 | 22.89 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 914 | 22.91 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 932 | 22.91 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 943 | 22.91 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 963 | 22.93 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 965 | 22.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 23 |
| 969 | 22.93 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 5 |