BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0778700 Os01g0778700|AK064933
         (438 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0778700  Conserved hypothetical protein                      796   0.0  
AK105438                                                          468   e-132
Os07g0571500  Conserved hypothetical protein                       79   9e-15

>Os01g0778700 Conserved hypothetical protein
          Length = 438

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/438 (92%), Positives = 405/438 (92%)

Query: 1   MGRRKVXXXXXXTPPRGSSKAGGGVISEIREKHKLELENLTLTKHPFRTLRFFMLAMLQY 60
           MGRRKV      TPPRGSSKAGGGVISEIREKHKLELENLTLTKHPFRTLRFFMLAMLQY
Sbjct: 1   MGRRKVAAAAAATPPRGSSKAGGGVISEIREKHKLELENLTLTKHPFRTLRFFMLAMLQY 60

Query: 61  LKRLATYILSKGAXXXXXXXXXXAPGILLAVTDGLHKKHVQEFLNYARFVLWWVSLGVAS 120
           LKRLATYILSKGA          APGILLAVTDGLHKKHVQEFLNYARFVLWWVSLGVAS
Sbjct: 61  LKRLATYILSKGALFVVLIVLVLAPGILLAVTDGLHKKHVQEFLNYARFVLWWVSLGVAS 120

Query: 121 SIGLGSGLHTFVLYLGPHIALFTIKAVQCGRIDLKTAPYDTIQLKQGPSWLDKKCSDFGP 180
           SIGLGSGLHTFVLYLGPHIALFTIKAVQCGRIDLKTAPYDTIQLKQGPSWLDKKCSDFGP
Sbjct: 121 SIGLGSGLHTFVLYLGPHIALFTIKAVQCGRIDLKTAPYDTIQLKQGPSWLDKKCSDFGP 180

Query: 181 PVYQASAHSVRIPVFELLPQVQLEAVLWGIGTALGELPPYFISRAARLSGSEPEAVKELD 240
           PVYQASAHSVRIPVFELLPQVQLEAVLWGIGTALGELPPYFISRAARLSGSEPEAVKELD
Sbjct: 181 PVYQASAHSVRIPVFELLPQVQLEAVLWGIGTALGELPPYFISRAARLSGSEPEAVKELD 240

Query: 241 AAASDEHGPIASTLNRTKRWLLSHSQHLNFITILILASVPNPLFDLAGIMCGQFGIPFWE 300
           AAASDEHGPIASTLNRTKRWLLSHSQHLNFITILILASVPNPLFDLAGIMCGQFGIPFWE
Sbjct: 241 AAASDEHGPIASTLNRTKRWLLSHSQHLNFITILILASVPNPLFDLAGIMCGQFGIPFWE 300

Query: 301 FFFATLIGKAIIKTHIQTLFIISLCNNQLLYLMEKELIWIFGHIPGFSASLPSVIAKLHS 360
           FFFATLIGKAIIKTHIQTLFIISLCNNQLLYLMEKELIWIFGHIPGFSASLPSVIAKLHS
Sbjct: 301 FFFATLIGKAIIKTHIQTLFIISLCNNQLLYLMEKELIWIFGHIPGFSASLPSVIAKLHS 360

Query: 361 AKDKYLSTPTSATSSSKMEDTQWNFSXXXXXXXXXXXXXXXXXIKIVTSTAQEYLKKQQD 420
           AKDKYLSTPTSATSSSKMEDTQWNFS                 IKIVTSTAQEYLKKQQD
Sbjct: 361 AKDKYLSTPTSATSSSKMEDTQWNFSFTLVWNTVVWLVLVNFFIKIVTSTAQEYLKKQQD 420

Query: 421 IEMELITDSSPQSQSKTN 438
           IEMELITDSSPQSQSKTN
Sbjct: 421 IEMELITDSSPQSQSKTN 438



>AK105438 
          Length = 426

 Score =  468 bits (1203), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/413 (57%), Positives = 305/413 (73%), Gaps = 6/413 (1%)

Query: 26  ISEIREKHKLELENLTLTKHPFRTLRFFMLAMLQYLKRLATYILSKGAXXXXXXXXXXAP 85
           +S++REKH+ +LE LTLT  P RTL  F LA+ Q +K     +L   A          + 
Sbjct: 16  LSDLREKHQFDLERLTLTSQPLRTLALFALAIGQSIKSTCLCVLKDSARLKFLVLLVASA 75

Query: 86  GILLAVTDGLHKKHVQEFLNYARFVLWWVSLGVASSIGLGSGLHTFVLYLGPHIALFTIK 145
              L +T+G H+KHVQE L Y RF LWWV LGVASSIGLGSGLHTFVLYLGPHIALFTIK
Sbjct: 76  CTPLLLTNGPHEKHVQELLWYIRFGLWWVILGVASSIGLGSGLHTFVLYLGPHIALFTIK 135

Query: 146 AVQCGRIDLKTAPYDTIQLKQGPSWLDKKCSDFGPPVYQASAHSVRIPVFELLPQVQLEA 205
           AV CGR DLK+APYDTI LK  PSWL+K C +FGPP+YQ +     IP  ++L +V LEA
Sbjct: 136 AVHCGRTDLKSAPYDTILLKMRPSWLEKDCLEFGPPMYQET-----IPFSKILHEVHLEA 190

Query: 206 VLWGIGTALGELPPYFISRAARLSGSEPEAVKELDAAASDEHGPIASTLNRTKRWLLSHS 265
           VLWGIGTALGELPPYF+SRAA +SG + + ++ELDA+ S E G ++STL+R KRWL+SHS
Sbjct: 191 VLWGIGTALGELPPYFLSRAASMSGRKLDELEELDASVSGE-GFLSSTLHRAKRWLMSHS 249

Query: 266 QHLNFITILILASVPNPLFDLAGIMCGQFGIPFWEFFFATLIGKAIIKTHIQTLFIISLC 325
           Q+LNF TIL+LASVPNPLFDLAGI+CGQF IPFW+FF ATLIGKA+IK +IQT  +I+LC
Sbjct: 250 QYLNFPTILLLASVPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQTTLVITLC 309

Query: 326 NNQLLYLMEKELIWIFGHIPGFSASLPSVIAKLHSAKDKYLSTPTSATSSSKMEDTQWNF 385
           NNQLL L+EK ++W+FG++P  S+ LPS++AKL +AK K+LS+  +A++SS +++T+WN 
Sbjct: 310 NNQLLDLVEKRIMWVFGNVPMVSSVLPSLVAKLKTAKSKFLSSSVAASASSVVKETKWNL 369

Query: 386 SXXXXXXXXXXXXXXXXXIKIVTSTAQEYLKKQQDIEMELITDSSPQSQSKTN 438
           S                 ++I+TSTAQ YLK+QQ++E+     ++ Q+ S+T 
Sbjct: 370 SFSLIWNTVVWLLIMNFIVQIITSTAQSYLKRQQELEIRKKLSATIQTVSETT 422



>Os07g0571500 Conserved hypothetical protein
          Length = 84

 Score = 78.6 bits (192), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/43 (74%), Positives = 38/43 (88%)

Query: 279 VPNPLFDLAGIMCGQFGIPFWEFFFATLIGKAIIKTHIQTLFI 321
           VPNPLFDLAGI+CGQF IPFW+FF ATLIGKA+IK +IQ  ++
Sbjct: 1   VPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQVCYL 43



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,741,599
Number of extensions: 518493
Number of successful extensions: 1150
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1145
Number of HSP's successfully gapped: 3
Length of query: 438
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 334
Effective length of database: 11,605,545
Effective search space: 3876252030
Effective search space used: 3876252030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)