BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0570700 Os07g0570700|AK065242
         (266 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0570700  Ribosome recycling factor family protein            439   e-124
Os04g0490400  Ribosome recycling factor family protein            105   3e-23

>Os07g0570700 Ribosome recycling factor family protein
          Length = 266

 Score =  439 bits (1130), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/240 (91%), Positives = 219/240 (91%)

Query: 27  QRPGCVPERPNILSSSTNFMSLRAGPMRFYSRPLILQNSDKRAVLRHATIEEIEAEKSVI 86
           QRPGCVPERPNILSSSTNFMSLRAGPMRFYSRPLILQNSDKRAVLRHATIEEIEAEKSVI
Sbjct: 27  QRPGCVPERPNILSSSTNFMSLRAGPMRFYSRPLILQNSDKRAVLRHATIEEIEAEKSVI 86

Query: 87  EDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSL 146
           EDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSL
Sbjct: 87  EDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSL 146

Query: 147 LIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGK 206
           LIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGK
Sbjct: 147 LIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGK 206

Query: 207 VAIRNIRRDAIKAYDXXXXXXXXSEDNVKDLSADLQKVTDEYMXXXXXXXXXXXXXLMKI 266
           VAIRNIRRDAIKAYD        SEDNVKDLSADLQKVTDEYM             LMKI
Sbjct: 207 VAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266



>Os04g0490400 Ribosome recycling factor family protein
          Length = 260

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 100/178 (56%), Gaps = 2/178 (1%)

Query: 72  RHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVN 131
           R  T+++       ++  A ++ME A+  +    + +RTGRA+P MLD I VE  G  V 
Sbjct: 68  RGDTVQDAPDIGPTVKSAATQQMEAAVVALSRELSKLRTGRASPGMLDHIMVETTGVKVA 127

Query: 132 LKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRR 191
           L  +A ++  DA +L + PYD SS+K IE  I+++ LG+ P+ DG  I   +PPLT +  
Sbjct: 128 LNRLAVVSVLDAHTLSVMPYDPSSMKSIEHAIISSPLGINPTPDGNRIIANIPPLTKENI 187

Query: 192 KELAKTVAKLAEEGKVAIRNIRRDAIKAYDXXXXXXXXSEDNVKDLSADLQKVTDEYM 249
           + L K V K AE+ K +IR  R+ A+             +D+VK L  +++++T +++
Sbjct: 188 QALCKVVTKSAEDFKQSIRRARQKALDTI--KKSASGMPKDDVKRLEKEVEELTKKFI 243



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.130    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,355,707
Number of extensions: 218772
Number of successful extensions: 638
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)