Os04g0490400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosome recycling factor family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0490400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Ribosome recycling factor family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.12 | 0.495 | 8.94 | 0.332 | 2.73 | 0.736 | 0.723 | -0.0792 | -0.284 | 17.7 | 21 | 145 | -- | -- |
| 111.09 | 0.491 | 8.94 | 0.331 | 2.73 | 0.733 | 0.707 | -- | -0.284 | 17.7 | 21 | 147 | -- | -- |
| 112.24 | 0.493 | 8.94 | 0.328 | 2.73 | 0.727 | -- | 0.0336 | -0.283 | 17.7 | 21.01 | 151 | -- | -- |
| 112.24 | 0.493 | 8.94 | 0.327 | 2.72 | 0.739 | -- | -- | -0.281 | 17.7 | 21.01 | 151 | -- | -- |
| 143.76 | 0.558 | 8.93 | 0.268 | -- | 3.22 | -- | 0.299 | -0.439 | -- | 1.86 | 626 | -- | -- |
| 125.47 | 0.525 | 8.92 | 0.406 | 2.98 | -- | 0.67 | -- | -0.219 | 17.1 | -- | -- | -- | -- |
| 126.61 | 0.527 | 8.92 | 0.407 | 2.99 | -- | -- | -- | -0.216 | 17.1 | -- | -- | -- | -- |
| 143.76 | 0.558 | 8.91 | 0.249 | -- | 3.25 | -- | -- | -0.39 | -- | 1.74 | 631 | -- | -- |
| 115.04 | 0.5 | 8.95 | -- | 2.7 | 0.762 | -- | -- | -0.307 | 17.7 | 20.41 | 152 | -- | -- |
| 594.84 | 1.14 | 8.89 | 0.3 | -- | -- | -- | -- | -0.291 | -- | -- | -- | -- | -- |
| 130.96 | 0.535 | 8.93 | -- | 2.98 | -- | -- | -- | -0.261 | 17.1 | -- | -- | -- | -- |
| 145.41 | 0.562 | 8.91 | -- | -- | 3.25 | -- | -- | -0.418 | -- | 1.74 | 631 | -- | -- |
| 597.21 | 1.14 | 8.89 | -- | -- | -- | -- | -- | -0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.59 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 3 | 98.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 5 | 99.07 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 6 | 99.09 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 8 | 99.29 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 9 | 99.36 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 8 |
| 23 | 100.30 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 24 | 100.44 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 32 | 100.85 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 39 | 101.10 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 43 | 101.18 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 45 | 101.21 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 46 | 101.24 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 48 | 101.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 49 | 101.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 57 | 101.51 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 70 | 101.70 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 71 | 101.70 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 72 | 101.71 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 78 | 101.75 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 8 |
| 83 | 101.81 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 84 | 101.81 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 104 | 102.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 106 | 102.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 107 | 102.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 109 | 102.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 110 | 102.13 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 112 | 102.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 125 | 102.27 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 127 | 102.28 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 139 | 102.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 141 | 102.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 143 | 102.41 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 169 | 102.60 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 223 | 103.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 17 |
| 226 | 103.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 230 | 103.23 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 237 | 103.26 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 241 | 103.32 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 253 | 103.41 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 259 | 103.45 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 274 | 103.54 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 278 | 103.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 287 | 103.59 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 288 | 103.59 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 289 | 103.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 293 | 103.59 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 298 | 103.59 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 299 | 103.59 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 301 | 103.59 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 310 | 103.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 314 | 103.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 7 |
| 317 | 103.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 343 | 103.79 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 365 | 103.84 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 18 |
| 385 | 103.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 417 | 104.09 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 418 | 104.09 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 440 | 104.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 444 | 104.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 452 | 104.22 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 453 | 104.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 466 | 104.29 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 8 |
| 471 | 104.31 | humidity | 80.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 472 | 104.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 476 | 104.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 479 | 104.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 510 | 104.42 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 513 | 104.42 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 534 | 104.50 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 542 | 104.54 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 550 | 104.55 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 554 | 104.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 572 | 104.62 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 583 | 104.65 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 623 | 104.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 629 | 104.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 636 | 104.86 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 669 | 104.93 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 10 |
| 676 | 104.96 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 679 | 104.98 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 20 |
| 684 | 104.99 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 706 | 105.06 | humidity | 70.0 | 30 | > th | dose independent | rect. | 4 | 18 |
| 710 | 105.08 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 711 | 105.08 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 757 | 105.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 768 | 105.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 787 | 105.29 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 793 | 105.32 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 20 |
| 817 | 105.38 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 829 | 105.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 15 |
| 830 | 105.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 15 |
| 832 | 105.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 9 |
| 835 | 105.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 854 | 105.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 902 | 105.60 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 934 | 105.66 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 938 | 105.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 959 | 105.74 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 9 |