Os07g0570700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosome recycling factor family protein.
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Os07g0570700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosome recycling factor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.71 | 0.354 | 13.5 | -0.231 | 1.83 | -0.695 | 0.415 | -2.49 | -0.42 | 21 | 41.77 | 202 | -- | -- |
| 61.98 | 0.367 | 13.5 | -0.25 | 1.8 | -0.809 | 0.16 | -- | -0.436 | 21.1 | 40.07 | 298 | -- | -- |
| 57.26 | 0.352 | 13.5 | -0.25 | 1.83 | -0.701 | -- | -2.33 | -0.42 | 21 | 41.78 | 204 | -- | -- |
| 61.81 | 0.366 | 13.5 | -0.33 | 1.77 | -0.77 | -- | -- | -0.439 | 21.2 | 40.18 | 326 | -- | -- |
| 163.43 | 0.595 | 13.5 | -0.599 | -- | -1.37 | -- | -1.11 | -0.73 | -- | 40.64 | 899 | -- | -- |
| 68.15 | 0.387 | 13.5 | -0.259 | 1.79 | -- | 0.144 | -- | -0.383 | 20.6 | -- | -- | -- | -- |
| 68.22 | 0.387 | 13.5 | -0.264 | 1.79 | -- | -- | -- | -0.383 | 20.6 | -- | -- | -- | -- |
| 158.79 | 0.587 | 13.5 | -0.462 | -- | -1.38 | -- | -- | -0.722 | -- | 40.69 | 909 | -- | -- |
| 64.09 | 0.373 | 13.5 | -- | 1.77 | -0.735 | -- | -- | -0.416 | 21.1 | 40.28 | 326 | -- | -- |
| 249.18 | 0.738 | 13.4 | -0.269 | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
| 70.06 | 0.392 | 13.5 | -- | 1.79 | -- | -- | -- | -0.353 | 20.6 | -- | -- | -- | -- |
| 164.47 | 0.597 | 13.5 | -- | -- | -1.36 | -- | -- | -0.692 | -- | 40.64 | 911 | -- | -- |
| 251.09 | 0.74 | 13.4 | -- | -- | -- | -- | -- | -0.369 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.37 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 8 |
| 3 | 48.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 14 | 50.19 | temperature | 10 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 18 | 50.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 37 | 51.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 52 | 51.75 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 17 |
| 77 | 52.19 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 82 | 52.21 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 11 |
| 90 | 52.26 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 95 | 52.28 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 105 | 52.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 151 | 52.79 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 17 |
| 153 | 52.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 156 | 52.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 169 | 52.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 193 | 53.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 272 | 53.60 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 305 | 53.73 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 312 | 53.77 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 10 |
| 313 | 53.77 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 329 | 53.89 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 19 |
| 340 | 53.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 377 | 54.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 406 | 54.30 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 413 | 54.32 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 422 | 54.35 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 466 | 54.54 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 23 |
| 535 | 54.83 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 560 | 54.91 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 8 |
| 603 | 55.03 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 20 |
| 688 | 55.28 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 716 | 55.36 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 746 | 55.41 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 749 | 55.42 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 808 | 55.56 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 18 |
| 925 | 55.78 | radiation | 40 | 270 | > th | dose dependent | sin | 9 | NA |
| 991 | 55.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 18 |