BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0570700 Os07g0570700|AK065242
         (266 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63190.1  | chr3:23342861-23344640 REVERSE LENGTH=276          273   6e-74
AT3G01800.1  | chr3:286020-287543 FORWARD LENGTH=268               92   4e-19

>AT3G63190.1 | chr3:23342861-23344640 REVERSE LENGTH=276
          Length = 275

 Score =  273 bits (699), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 137/227 (60%), Positives = 174/227 (76%), Gaps = 1/227 (0%)

Query: 40  SSSTNFMSLRAGPMRFYSRPLILQNSDKRAVLRHATIEEIEAEKSVIEDQARERMEKAIE 99
           S  T+ + L AG +     P++ ++  KR V+R ATIEEIEAEKS IE   + +MEK IE
Sbjct: 50  SFKTDKLPLGAG-VNLSGGPVVKRSLQKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIE 108

Query: 100 TVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLI 159
           T++ +FN++RTGR+N AMLD+IEVEYYG+PV+LKSIAQI+TPD +SLL+QPYDKSSLK I
Sbjct: 109 TLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAI 168

Query: 160 EKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKA 219
           EK IV ++LGVTP+NDG+VIR+++PPLTSDRRKEL+K VAK +EEGKVA+RNIRRDA+K+
Sbjct: 169 EKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKS 228

Query: 220 YDXXXXXXXXSEDNVKDLSADLQKVTDEYMXXXXXXXXXXXXXLMKI 266
           YD        SEDNVKDLS+DLQK+ D YM             LMK+
Sbjct: 229 YDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275



>AT3G01800.1 | chr3:286020-287543 FORWARD LENGTH=268
          Length = 267

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 86  IEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATS 145
           ++  A  +ME AI+ +  +   +RTGRA P MLD I VE  G  + L  +A ++  D  +
Sbjct: 89  VKAAASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKT 148

Query: 146 LLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEG 205
           L + PYD  ++K +EK IVA+ LG+ P  DG+ +  ++P LT +  + + K V K +E  
Sbjct: 149 LSVNPYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVV 208

Query: 206 KVAIRNIRRDAIKAYDXXXXXXXXSEDNVKDLSADLQKVTDEYM 249
           K +IR  R+ A+             +D VK L  ++ ++T +++
Sbjct: 209 KQSIRRARQKALDTI--KKAGSSLPKDEVKRLEKEVDELTKKFV 250



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,145,266
Number of extensions: 146234
Number of successful extensions: 431
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)