BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0568500 Os07g0568500|AK109391
         (272 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0568500  Conserved hypothetical protein                      563   e-161
Os02g0614400  Conserved hypothetical protein                      326   1e-89

>Os07g0568500 Conserved hypothetical protein
          Length = 272

 Score =  563 bits (1452), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MVLCQGLSAGHAQLLAFPAAKHNVSFARTSCLGTPAGSWSVKRARLHAERKSFSMGALRV 60
           MVLCQGLSAGHAQLLAFPAAKHNVSFARTSCLGTPAGSWSVKRARLHAERKSFSMGALRV
Sbjct: 1   MVLCQGLSAGHAQLLAFPAAKHNVSFARTSCLGTPAGSWSVKRARLHAERKSFSMGALRV 60

Query: 61  GTGFVQNDMLASFGRDDSIKGIPSLAARHSQHRRLEVGCRASSLASFSYPELTSKPRWWW 120
           GTGFVQNDMLASFGRDDSIKGIPSLAARHSQHRRLEVGCRASSLASFSYPELTSKPRWWW
Sbjct: 61  GTGFVQNDMLASFGRDDSIKGIPSLAARHSQHRRLEVGCRASSLASFSYPELTSKPRWWW 120

Query: 121 RTVACVPYLLPLHNMWSYADVIYQLHTYLQGFSLVYTFIDTMTLFPGWLLLVIFMTVYFF 180
           RTVACVPYLLPLHNMWSYADVIYQLHTYLQGFSLVYTFIDTMTLFPGWLLLVIFMTVYFF
Sbjct: 121 RTVACVPYLLPLHNMWSYADVIYQLHTYLQGFSLVYTFIDTMTLFPGWLLLVIFMTVYFF 180

Query: 181 VVRRKWSPHFLRFHVILAILLDTGSQAVATMCTWMPSIVYQGTPMQYFWMAIAFIQIFTV 240
           VVRRKWSPHFLRFHVILAILLDTGSQAVATMCTWMPSIVYQGTPMQYFWMAIAFIQIFTV
Sbjct: 181 VVRRKWSPHFLRFHVILAILLDTGSQAVATMCTWMPSIVYQGTPMQYFWMAIAFIQIFTV 240

Query: 241 LECMRCALAGMYPNVPFISHTAFIHSDLNLFR 272
           LECMRCALAGMYPNVPFISHTAFIHSDLNLFR
Sbjct: 241 LECMRCALAGMYPNVPFISHTAFIHSDLNLFR 272



>Os02g0614400 Conserved hypothetical protein
          Length = 257

 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 168/273 (61%), Positives = 194/273 (71%), Gaps = 19/273 (6%)

Query: 3   LCQGLSAGHAQLLAFPAAKHNVSFARTSCLGTPAGSWSVK---RARLHAERKSFSMGALR 59
           + Q  +  +A++L FPAA  +         G P GS +       R  A R       LR
Sbjct: 1   MAQVTATANARVLGFPAASRH---------GGPVGSRAGPAFLNLRAPALRHDSKKHPLR 51

Query: 60  VGTGFVQNDMLASFGRDDSIKGIPSLAARHSQHRRLEVGCRASSLASFSYPELTSKPRWW 119
           VG         + F + D IKGI  L +      R +VGCRAS L+SFS+PEL +KPRWW
Sbjct: 52  VGAA------SSLFTKYDPIKGIKPLLSIDKLRPRTQVGCRAS-LSSFSFPELETKPRWW 104

Query: 120 WRTVACVPYLLPLHNMWSYADVIYQLHTYLQGFSLVYTFIDTMTLFPGWLLLVIFMTVYF 179
           WRT+ACVPYLLPLHNMWS+AD +YQLH YLQ F L Y FIDTM L PGWL L+IFMTVYF
Sbjct: 105 WRTLACVPYLLPLHNMWSFADAVYQLHPYLQQFGLFYAFIDTMALVPGWLFLMIFMTVYF 164

Query: 180 FVVRRKWSPHFLRFHVILAILLDTGSQAVATMCTWMPSIVYQGTPMQYFWMAIAFIQIFT 239
           FVVRRKW PHFLR+HVILAILLDTGSQA+ATMC W PSIVYQG PM +FWM IAFIQI T
Sbjct: 165 FVVRRKWLPHFLRYHVILAILLDTGSQALATMCNWNPSIVYQGKPMVFFWMTIAFIQIST 224

Query: 240 VLECMRCALAGMYPNVPFISHTAFIHSDLNLFR 272
           VLECMRCALAGMYP+VPF+S TAFIHSD+++FR
Sbjct: 225 VLECMRCALAGMYPSVPFVSQTAFIHSDMSMFR 257



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.138    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,244,549
Number of extensions: 364714
Number of successful extensions: 1008
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1007
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 155 (64.3 bits)