Os07g0568500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0568500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.7 | 0.464 | 9.17 | 0.444 | 0.838 | -1.46 | 0.554 | 1.79 | -0.432 | 18.4 | 24.3 | 399 | 6.37 | 4.4 |
| 107.56 | 0.483 | 9.14 | 0.709 | 0.832 | -1.57 | 0.154 | -- | -0.361 | 18.4 | 23.5 | 444 | 5.88 | 4.67 |
| 97.31 | 0.459 | 9.18 | 0.446 | 0.801 | -1.5 | -- | 1.77 | -0.414 | 18.5 | 23.7 | 416 | 6.22 | 4.45 |
| 107.22 | 0.482 | 9.14 | 0.709 | 0.845 | -1.68 | -- | -- | -0.357 | 18.5 | 23.56 | 447 | 5.75 | 5.43 |
| 124.95 | 0.521 | 9.14 | 0.343 | -- | -1.48 | -- | 1.88 | -0.486 | -- | 23.5 | 455 | 4.67 | 5.3 |
| 162.12 | 0.597 | 9.09 | 0.941 | 1.14 | -- | -1.42 | -- | -0.0767 | 21.1 | -- | -- | -- | -- |
| 168.46 | 0.608 | 9.09 | 0.995 | 1.16 | -- | -- | -- | -0.0726 | 20.7 | -- | -- | -- | -- |
| 129.98 | 0.531 | 9.15 | 0.798 | -- | -1.65 | -- | -- | -0.42 | -- | 24.49 | 436 | 3.37 | 7.42 |
| 119.33 | 0.509 | 9.16 | -- | 0.83 | -1.84 | -- | -- | -0.446 | 18.2 | 23.6 | 449 | 5.83 | 5.6 |
| 244.27 | 0.73 | 9.06 | 0.993 | -- | -- | -- | -- | -0.082 | -- | -- | -- | -- | -- |
| 194.56 | 0.652 | 9.11 | -- | 1.15 | -- | -- | -- | -0.183 | 20.8 | -- | -- | -- | -- |
| 141.61 | 0.554 | 9.15 | -- | -- | -1.73 | -- | -- | -0.504 | -- | 24.4 | 449 | 3.22 | 8.14 |
| 270.27 | 0.767 | 9.08 | -- | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 5 | 102.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 8 | 103.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 13 | 104.15 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 5 |
| 32 | 105.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 36 | 105.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 86 | 107.97 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 109 | 108.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 123 | 109.09 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 154 | 109.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 172 | 110.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 191 | 110.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 221 | 111.21 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 238 | 111.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 443 | 114.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 466 | 114.71 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 16 |
| 480 | 114.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 491 | 114.97 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 587 | 116.00 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 7 |
| 600 | 116.20 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 16 |
| 645 | 116.63 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 654 | 116.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 712 | 117.03 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 9 |
| 727 | 117.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 783 | 117.74 | radiation | 40 | 720 | > th | dose dependent | rect. | 10 | 1 |