BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0568500 Os07g0568500|AK109391
         (272 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04940.1  | chr1:1399588-1400616 FORWARD LENGTH=275            178   4e-45
AT1G04945.3  | chr1:1399588-1402651 FORWARD LENGTH=645            161   4e-40
AT4G03320.1  | chr4:1464529-1465820 FORWARD LENGTH=285            133   8e-32

>AT1G04940.1 | chr1:1399588-1400616 FORWARD LENGTH=275
          Length = 274

 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 120/196 (61%), Gaps = 8/196 (4%)

Query: 74  GRDDSIKG-IPSLAARHSQHRRLEVGCRASS--LASFSYPELTSKPRWWWRTVACVPYLL 130
           G   S+ G +P L  R    R+  +  RAS    +SF +P +T KP+WWWRT+AC+PYL+
Sbjct: 79  GEQGSLSGTLPVLPVR----RKTLLTPRASKDVPSSFRFPPMTKKPQWWWRTLACLPYLM 134

Query: 131 PLHNMWSYADVIYQLHTYLQGFS-LVYTFIDTMTLFPGWLLLVIFMTVYFFVVRRKWSPH 189
           PLH  W YA+  Y LH +L+ F  L Y F+  +   P W L+  F   Y  +VRRK  PH
Sbjct: 135 PLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGIVRRKEWPH 194

Query: 190 FLRFHVILAILLDTGSQAVATMCTWMPSIVYQGTPMQYFWMAIAFIQIFTVLECMRCALA 249
           F RFHV++ +LL+   Q + T+  WMP  VY G    +FW A+AF  +FTVLE +RCALA
Sbjct: 195 FFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYLFTVLESIRCALA 254

Query: 250 GMYPNVPFISHTAFIH 265
           GMY ++PF+   A+I 
Sbjct: 255 GMYADIPFVCDAAYIQ 270



>AT1G04945.3 | chr1:1399588-1402651 FORWARD LENGTH=645
          Length = 644

 Score =  161 bits (407), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 109/180 (60%), Gaps = 8/180 (4%)

Query: 74  GRDDSIKG-IPSLAARHSQHRRLEVGCRASSL--ASFSYPELTSKPRWWWRTVACVPYLL 130
           G   S+ G +P L  R    R+  +  RAS    +SF +P +T KP+WWWRT+AC+PYL+
Sbjct: 79  GEQGSLSGTLPVLPVR----RKTLLTPRASKDVPSSFRFPPMTKKPQWWWRTLACLPYLM 134

Query: 131 PLHNMWSYADVIYQLHTYLQGFS-LVYTFIDTMTLFPGWLLLVIFMTVYFFVVRRKWSPH 189
           PLH  W YA+  Y LH +L+ F  L Y F+  +   P W L+  F   Y  +VRRK  PH
Sbjct: 135 PLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGIVRRKEWPH 194

Query: 190 FLRFHVILAILLDTGSQAVATMCTWMPSIVYQGTPMQYFWMAIAFIQIFTVLECMRCALA 249
           F RFHV++ +LL+   Q + T+  WMP  VY G    +FW A+AF  +FTVLE +RCALA
Sbjct: 195 FFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYLFTVLESIRCALA 254



>AT4G03320.1 | chr4:1464529-1465820 FORWARD LENGTH=285
          Length = 284

 Score =  133 bits (335), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 109/197 (55%), Gaps = 10/197 (5%)

Query: 80  KGIPSLAARHSQHRRLEVGCRASSLASFS--YPELTSKPRWWWRTVACVPYLLPLHNMWS 137
            G+P LA    +HRR     R +    F    P++  +P WWWRT+ACVPYL+ L     
Sbjct: 84  NGLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPYLISLQ---- 139

Query: 138 YADVIYQLHTYLQGFS----LVYTFIDTMTLFPGWLLLVIFMTVYFFVVRRKWSPHFLRF 193
            +DV + +  +L+       ++Y     +  +P W  +V     Y +VV+ K  PH+LRF
Sbjct: 140 ISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYLRF 199

Query: 194 HVILAILLDTGSQAVATMCTWMPSIVYQGTPMQYFWMAIAFIQIFTVLECMRCALAGMYP 253
           H+++ +LL+T  Q +     + P I ++G    Y+WMAI F  I  +LEC+RCALAG+Y 
Sbjct: 200 HMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGVYA 259

Query: 254 NVPFISHTAFIHSDLNL 270
            +PF++  A IH+  NL
Sbjct: 260 QIPFMTDAASIHTLFNL 276



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.138    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,784,121
Number of extensions: 224355
Number of successful extensions: 579
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 3
Length of query: 272
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 175
Effective length of database: 8,447,217
Effective search space: 1478262975
Effective search space used: 1478262975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 111 (47.4 bits)