Os02g0614400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0614400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.45 | 0.237 | 12.9 | 0.385 | 0.664 | 0.516 | 0.325 | 0.442 | 0.235 | 20.3 | 25.6 | 78 | -- | -- |
| 25.5 | 0.237 | 12.9 | 0.344 | 0.706 | 0.581 | 0.352 | -- | 0.231 | 20.3 | 26.17 | 57 | -- | -- |
| 25.77 | 0.236 | 12.9 | 0.374 | 0.661 | 0.537 | -- | 0.432 | 0.236 | 20.4 | 25.61 | 78 | -- | -- |
| 25.8 | 0.237 | 12.9 | 0.328 | 0.674 | 0.596 | -- | -- | 0.235 | 20.4 | 26.2 | 57 | -- | -- |
| 40.34 | 0.296 | 12.9 | 0.268 | -- | 0.862 | -- | 0.0119 | 0.163 | -- | 24.4 | 472 | -- | -- |
| 30.27 | 0.258 | 12.9 | 0.427 | 0.755 | -- | 0.606 | -- | 0.252 | 19.3 | -- | -- | -- | -- |
| 31.23 | 0.262 | 12.9 | 0.414 | 0.755 | -- | -- | -- | 0.252 | 19.3 | -- | -- | -- | -- |
| 40.32 | 0.296 | 12.9 | 0.249 | -- | 0.858 | -- | -- | 0.16 | -- | 24.4 | 480 | -- | -- |
| 28.51 | 0.249 | 12.9 | -- | 0.684 | 0.695 | -- | -- | 0.202 | 20.5 | 26.34 | 30 | -- | -- |
| 61.58 | 0.367 | 12.9 | 0.401 | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
| 35.74 | 0.28 | 12.9 | -- | 0.752 | -- | -- | -- | 0.206 | 19.4 | -- | -- | -- | -- |
| 41.88 | 0.301 | 12.9 | -- | -- | 0.899 | -- | -- | 0.126 | -- | 24.3 | 489 | -- | -- |
| 65.82 | 0.379 | 12.9 | -- | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 8 | 23.74 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 14 | 23.83 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 100 | 24.42 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 130 | 24.52 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 157 | 24.60 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 370 | 25.07 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 373 | 25.08 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 14 |
| 528 | 25.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 594 | 25.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 602 | 25.42 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 14 |
| 631 | 25.46 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 11 |
| 706 | 25.54 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 736 | 25.56 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 843 | 25.65 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 855 | 25.66 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 866 | 25.67 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 867 | 25.67 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 903 | 25.69 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 978 | 25.76 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |