BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0614400 Os02g0614400|AK071805
(257 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0614400 Conserved hypothetical protein 530 e-151
Os07g0568500 Conserved hypothetical protein 326 9e-90
>Os02g0614400 Conserved hypothetical protein
Length = 257
Score = 530 bits (1365), Expect = e-151, Method: Compositional matrix adjust.
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MAQVTATANARVLGFPAASRHGGPVGSRAGPAFLNLRAPALRHDSKKHPLRVGAASSLFT 60
MAQVTATANARVLGFPAASRHGGPVGSRAGPAFLNLRAPALRHDSKKHPLRVGAASSLFT
Sbjct: 1 MAQVTATANARVLGFPAASRHGGPVGSRAGPAFLNLRAPALRHDSKKHPLRVGAASSLFT 60
Query: 61 KYDPIKGIKPLLSIDKLRPRTQVGCRASLSSFSFPELETKPRWWWRTLACVPYLLPLHNM 120
KYDPIKGIKPLLSIDKLRPRTQVGCRASLSSFSFPELETKPRWWWRTLACVPYLLPLHNM
Sbjct: 61 KYDPIKGIKPLLSIDKLRPRTQVGCRASLSSFSFPELETKPRWWWRTLACVPYLLPLHNM 120
Query: 121 WSFADAVYQLHPYLQQFGLFYAFIDTMALVPGWLFLMIFMTVYFFVVRRKWLPHFLRYHV 180
WSFADAVYQLHPYLQQFGLFYAFIDTMALVPGWLFLMIFMTVYFFVVRRKWLPHFLRYHV
Sbjct: 121 WSFADAVYQLHPYLQQFGLFYAFIDTMALVPGWLFLMIFMTVYFFVVRRKWLPHFLRYHV 180
Query: 181 ILAILLDTGSQALATMCNWNPSIVYQGKPMVFFWMTIAFIQISTVLECMRCALAGMYPSV 240
ILAILLDTGSQALATMCNWNPSIVYQGKPMVFFWMTIAFIQISTVLECMRCALAGMYPSV
Sbjct: 181 ILAILLDTGSQALATMCNWNPSIVYQGKPMVFFWMTIAFIQISTVLECMRCALAGMYPSV 240
Query: 241 PFVSQTAFIHSDMSMFR 257
PFVSQTAFIHSDMSMFR
Sbjct: 241 PFVSQTAFIHSDMSMFR 257
>Os07g0568500 Conserved hypothetical protein
Length = 272
Score = 326 bits (836), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 168/273 (61%), Positives = 194/273 (71%), Gaps = 19/273 (6%)
Query: 1 MAQVTATANARVLGFPAASRH---------GGPVGSRAGPAFLNLRAPALRHDSKKHPLR 51
+ Q + +A++L FPAA + G P GS + R A R LR
Sbjct: 3 LCQGLSAGHAQLLAFPAAKHNVSFARTSCLGTPAGSWSVK---RARLHAERKSFSMGALR 59
Query: 52 VGAA------SSLFTKYDPIKGIKPLLSIDKLRPRTQVGCRAS-LSSFSFPELETKPRWW 104
VG + F + D IKGI L + R +VGCRAS L+SFS+PEL +KPRWW
Sbjct: 60 VGTGFVQNDMLASFGRDDSIKGIPSLAARHSQHRRLEVGCRASSLASFSYPELTSKPRWW 119
Query: 105 WRTLACVPYLLPLHNMWSFADAVYQLHPYLQQFGLFYAFIDTMALVPGWLFLMIFMTVYF 164
WRT+ACVPYLLPLHNMWS+AD +YQLH YLQ F L Y FIDTM L PGWL L+IFMTVYF
Sbjct: 120 WRTVACVPYLLPLHNMWSYADVIYQLHTYLQGFSLVYTFIDTMTLFPGWLLLVIFMTVYF 179
Query: 165 FVVRRKWLPHFLRYHVILAILLDTGSQALATMCNWNPSIVYQGKPMVFFWMTIAFIQIST 224
FVVRRKW PHFLR+HVILAILLDTGSQA+ATMC W PSIVYQG PM +FWM IAFIQI T
Sbjct: 180 FVVRRKWSPHFLRFHVILAILLDTGSQAVATMCTWMPSIVYQGTPMQYFWMAIAFIQIFT 239
Query: 225 VLECMRCALAGMYPSVPFVSQTAFIHSDMSMFR 257
VLECMRCALAGMYP+VPF+S TAFIHSD+++FR
Sbjct: 240 VLECMRCALAGMYPNVPFISHTAFIHSDLNLFR 272
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.140 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,646,374
Number of extensions: 349914
Number of successful extensions: 1160
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1159
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 158
Effective length of database: 11,866,615
Effective search space: 1874925170
Effective search space used: 1874925170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 155 (64.3 bits)