BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0568200 Os07g0568200|AK102232
(977 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0568200 Homeodomain-related containing protein 1912 0.0
AK066055 440 e-123
Os03g0346900 Hypothetical protein 266 8e-71
>Os07g0568200 Homeodomain-related containing protein
Length = 977
Score = 1912 bits (4954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/977 (94%), Positives = 923/977 (94%)
Query: 1 MDDLEVKNDEEYQMDPIEIKDGEEHSIEMLVEQPRFLEPICPEEVNEDTRVYPRVGDEYQ 60
MDDLEVKNDEEYQMDPIEIKDGEEHSIEMLVEQPRFLEPICPEEVNEDTRVYPRVGDEYQ
Sbjct: 1 MDDLEVKNDEEYQMDPIEIKDGEEHSIEMLVEQPRFLEPICPEEVNEDTRVYPRVGDEYQ 60
Query: 61 VEIPNLATEEERMKLRSCPVDDSGIFGFDYPVGVGLAIPVTWTQKTSDHVKKEQTGFSGR 120
VEIPNLATEEERMKLRSCPVDDSGIFGFDYPVGVGLAIPVTWTQKTSDHVKKEQTGFSGR
Sbjct: 61 VEIPNLATEEERMKLRSCPVDDSGIFGFDYPVGVGLAIPVTWTQKTSDHVKKEQTGFSGR 120
Query: 121 SSCSSQDECNSHVTEDIPRNVPGCKVECDEHDEKLLKSAEQDINCLQNGKASDYIPLPGM 180
SSCSSQDECNSHVTEDIPRNVPGCKVECDEHDEKLLKSAEQDINCLQNGKASDYIPLPGM
Sbjct: 121 SSCSSQDECNSHVTEDIPRNVPGCKVECDEHDEKLLKSAEQDINCLQNGKASDYIPLPGM 180
Query: 181 THYSWTDEEAQTFLLGLYIFGKNLVQVTKFLQCKTMGEVLSYYYGEFFRSDSYNRWAACR 240
THYSWTDEEAQTFLLGLYIFGKNLVQVTKFLQCKTMGEVLSYYYGEFFRSDSYNRWAACR
Sbjct: 181 THYSWTDEEAQTFLLGLYIFGKNLVQVTKFLQCKTMGEVLSYYYGEFFRSDSYNRWAACR 240
Query: 241 KVRSRRCILGLRIFSGTRQQELLSRMLAGIAREVQHPLLEVFKTFNEGTSTFEEFILSLR 300
KVRSRRCILGLRIFSGTRQQELLSRMLAGIAREVQHPLLEVFKTFNEGTSTFEEFILSLR
Sbjct: 241 KVRSRRCILGLRIFSGTRQQELLSRMLAGIAREVQHPLLEVFKTFNEGTSTFEEFILSLR 300
Query: 301 STVGARVLVEAVGIGKGKYDLTGFALDPSRNHGISTRAEIPIGKACSSLSSGDIIKFLTG 360
STVGARVLVEAVGIGKGKYDLTGFALDPSRNHGISTRAEIPIGKACSSLSSGDIIKFLTG
Sbjct: 301 STVGARVLVEAVGIGKGKYDLTGFALDPSRNHGISTRAEIPIGKACSSLSSGDIIKFLTG 360
Query: 361 DFRLSKAKSNDLFWEAVWPRLLARGWHSEQPKDSSLVGKHALVFLIPGVKKFSRKKLVRG 420
DFRLSKAKSNDLFWEAVWPRLLARGWHSEQPKDSSLVGKHALVFLIPGVKKFSRKKLVRG
Sbjct: 361 DFRLSKAKSNDLFWEAVWPRLLARGWHSEQPKDSSLVGKHALVFLIPGVKKFSRKKLVRG 420
Query: 421 NHYFDSVSDVLSKVASEPRLLEFGVEGSNGEGGFKIENGWIHDAELEKSTVTDKKSSCYT 480
NHYFDSVSDVLSKVASEPRLLEFGVEGSNGEGGFKIENGWIHDAELEKSTVTDKKSSCYT
Sbjct: 421 NHYFDSVSDVLSKVASEPRLLEFGVEGSNGEGGFKIENGWIHDAELEKSTVTDKKSSCYT 480
Query: 481 RPSEPGCSPELMKFTVVDTSVVQGEEPCKVRSLRNLPTDASHGYMXXXXXXXXXXXXXXX 540
RPSEPGCSPELMKFTVVDTSVVQGEEPCKVRSLRNLPTDASHGYM
Sbjct: 481 RPSEPGCSPELMKFTVVDTSVVQGEEPCKVRSLRNLPTDASHGYMSSPHSEDSGSDSSEE 540
Query: 541 XXXXXXXXXXYEHINTNQNKTGAKYVNEKKCKPPTGDRMDIDVLQKNSTFAGTMTSTNGH 600
YEHINTNQNKTGAKYVNEKKCKPPTGDRMDIDVLQKNSTFAGTMTSTNGH
Sbjct: 541 HSDSEDSSQSYEHINTNQNKTGAKYVNEKKCKPPTGDRMDIDVLQKNSTFAGTMTSTNGH 600
Query: 601 MSFDQGFSLMNNACSSTATILPVGTQRVHATNSSTEINFQFDQRVTPEPQIFLAASVAKR 660
MSFDQGFSLMNNACSSTATILPVGTQRVHATNSSTEINFQFDQRVTPEPQIFLAASVAKR
Sbjct: 601 MSFDQGFSLMNNACSSTATILPVGTQRVHATNSSTEINFQFDQRVTPEPQIFLAASVAKR 660
Query: 661 RRLVSCKNERTGRRNTAANKRQHGKQVDTAQHDVSKSNEASAGAKPFIWGSIPNSSTTIN 720
RRLVSCKNERTGRRNTAANKRQHGKQVDTAQHDVSKSNEASAGAKPFIWGSIPNSSTTIN
Sbjct: 661 RRLVSCKNERTGRRNTAANKRQHGKQVDTAQHDVSKSNEASAGAKPFIWGSIPNSSTTIN 720
Query: 721 FDMSNIHLCHKQYNVPPTDEKMVLKEKSQDKHVIDLNIPQVPSDYESAVSYIVPSSDKNT 780
FDMSNIHLCHKQYNVPPTDEKMVLKEKSQDKHVIDLNIPQVPSDYESAVSYIVPSSDKNT
Sbjct: 721 FDMSNIHLCHKQYNVPPTDEKMVLKEKSQDKHVIDLNIPQVPSDYESAVSYIVPSSDKNT 780
Query: 781 HTMDRSIHSSETNRMDDCLPDINASCNGLLSEXXXXXXXXXXXXXXALEALACGFIGTKQ 840
HTMDRSIHSSETNRMDDCLPDINASCNGLLSE ALEALACGFIGTKQ
Sbjct: 781 HTMDRSIHSSETNRMDDCLPDINASCNGLLSEQRRQSTRSRPPTTRALEALACGFIGTKQ 840
Query: 841 KGAEGNFXXXXXXXXXXXXXXXLTDGAVSFPSDGEGSSSHFTDSAIIVNEWHMTNRQYQV 900
KGAEGNF LTDGAVSFPSDGEGSSSHFTDSAIIVNEWHMTNRQYQV
Sbjct: 841 KGAEGNFPSSSRSSRPVRRPRRLTDGAVSFPSDGEGSSSHFTDSAIIVNEWHMTNRQYQV 900
Query: 901 LDNTPTDKSTDNRTRELFGADKSADKGTREFFGADKSADKGTREFFGADKSADKGTREFF 960
LDNTPTDKSTDNRTRELFGADKSADKGTREFFGADKSADKGTREFFGADKSADKGTREFF
Sbjct: 901 LDNTPTDKSTDNRTRELFGADKSADKGTREFFGADKSADKGTREFFGADKSADKGTREFF 960
Query: 961 GADKSADKGSHELFGIP 977
GADKSADKGSHELFGIP
Sbjct: 961 GADKSADKGSHELFGIP 977
>AK066055
Length = 206
Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 34 PRFLEPICPEEVNEDTRVYPRVGDEYQVEIPNLATEEERMKLRSCPVDDSGIFGFDYPVG 93
PRFLEPICPEEVNEDTRVYPRVGDEYQVEIPNLATEEERMKLRSCPVDDSGIFGFDYPVG
Sbjct: 1 PRFLEPICPEEVNEDTRVYPRVGDEYQVEIPNLATEEERMKLRSCPVDDSGIFGFDYPVG 60
Query: 94 VGLAIPVTWTQKTSDHVKKEQTGFSGRSSCSSQDECNSHVTEDIPRNVPGCKVECDEHDE 153
VGLAIPVTWTQKTSDHVKKEQTGFSGRSSCSSQDECNSHVTEDIPRNVPGCKVECDEHDE
Sbjct: 61 VGLAIPVTWTQKTSDHVKKEQTGFSGRSSCSSQDECNSHVTEDIPRNVPGCKVECDEHDE 120
Query: 154 KLLKSAEQDINCLQNGKASDYIPLPGMTHYSWTDEEAQTFLLGLYIFGKNLVQVTKFLQC 213
KLLKSAEQDINCLQNGKASDYIPLPGMTHYSWTDEEAQTFLLGLYIFGKNLVQVTKFLQC
Sbjct: 121 KLLKSAEQDINCLQNGKASDYIPLPGMTHYSWTDEEAQTFLLGLYIFGKNLVQVTKFLQC 180
Query: 214 KTMGEVLSYYYGEFFRSDSYNRWAA 238
KTMGEVLSYYYGEFFRSDSYNRWAA
Sbjct: 181 KTMGEVLSYYYGEFFRSDSYNRWAA 205
>Os03g0346900 Hypothetical protein
Length = 506
Score = 266 bits (679), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 221/403 (54%), Gaps = 49/403 (12%)
Query: 281 VFKTFNEGTSTFEEFILSLRSTVGARVLVEAVGIGKGKYDLTGFALDPSR-NHGISTRAE 339
+FK+FN+ ++ +F+ L+S VG VEAV IGKGK DLTGF LDPS+ N +S +
Sbjct: 1 MFKSFNDSQTSLMDFVFHLKSVVGIEAFVEAVAIGKGKDDLTGFVLDPSKPNQVLSVQPG 60
Query: 340 IPIGKACSSLSSGDIIKFLTGDFRLSKAKSNDLFWEAVWPRLLARGWHSEQPKDSSLVGK 399
+P GK CSSL+S DIIKFLTGDFR SK +SNDLFWEAVWPRLLARGWHSE+P D S K
Sbjct: 61 MPAGKDCSSLASEDIIKFLTGDFRRSKTRSNDLFWEAVWPRLLARGWHSEKPNDVSTT-K 119
Query: 400 HALVFLIPGVKKFSRKKLVRGNHYFDSVSDVLSKVASEPRLLEFGVEGSNGEGGFKIENG 459
+ LVF++PG+++FSR +L +G HYFDSVSDVL KV ++P LLE V+G G G +NG
Sbjct: 120 NCLVFIVPGIQRFSRSELTKGTHYFDSVSDVLKKVVADPVLLEIEVDGM-GNGVNAEKNG 178
Query: 460 WIHDAELEKSTVTDKKSSCYTRPSEPGCSPELMKFTVVDTSVVQGEEPCKVRSLRNLPTD 519
+ +L + D EL KFT++DTS+VQGEEP +VR LRNLP D
Sbjct: 179 FDTAMKLNQDVPFDGYH-------------ELPKFTIIDTSLVQGEEPSQVRELRNLPAD 225
Query: 520 ASHGYMXXXXXXXXXXXXXXXXXXXXXXXXXYE--HINTNQNKTGAKYVNEKKCKPPTGD 577
A+ + Y+ + ++ G + V+ K +
Sbjct: 226 ANISFGPLRHTHNMVSDSSSDEHDTDDRSSDYKEGYAGVTADENGTEMVSSKNAD----N 281
Query: 578 RMDIDVLQKNSTFAGTMTSTNGHMSFDQGFSLMNNACSSTATILPVGTQRVHATNSSTEI 637
+D + + + ++ NGH S G ++ AT
Sbjct: 282 ESQVDSFRNMAATSCSVFPVNGHSSNGNGDTI-------GATSF---------------- 318
Query: 638 NFQFDQRVTPEPQIFLAASVAKRRRLVSCKNERTGRRNTAANK 680
F Q+ E + +L+ V KRRRL SC N++T RR+ + +K
Sbjct: 319 ---FPQKTKIEKRKYLSP-VTKRRRLTSCSNDQTSRRSFSFSK 357
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,286,607
Number of extensions: 1348585
Number of successful extensions: 2925
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2913
Number of HSP's successfully gapped: 3
Length of query: 977
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 867
Effective length of database: 11,292,261
Effective search space: 9790390287
Effective search space used: 9790390287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)