FiT-DB / Search/ Help/ Sample detail

Os03g0346900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0107) R2 : 0.75
β1 : 0.894 (0.0393) R2dD : 0.295 R2D : 0.267
β2 : 0.794 (0.0275) R2dC : 0.462 R2C : 0.462
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0959 (0.0229) R2dN8 : 0.0129 R2N8 : -0.0115
σ : 0.202
deviance : 18.58
__
_____
C
peak time of C : 7.73
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.8 0.175 10.8 1.08 0.772 -0.294 0.236 0.469 0.186 7.94 20.7 282 -- --
14.79 0.179 10.8 0.979 0.754 -0.297 0.215 -- 0.174 7.85 21.23 366 -- --
13.96 0.174 10.8 1.08 0.777 -0.296 -- 0.438 0.186 7.94 20.65 271 -- --
14.66 0.178 10.8 0.999 0.786 -0.317 -- -- 0.17 8.01 20.6 224 -- --
33.03 0.268 10.8 1.28 -- -0.649 -- 0.744 0.3 -- 26.4 614 -- --
18.51 0.202 10.9 0.89 0.794 -- 0.159 -- 0.0961 7.74 -- -- -- --
18.58 0.202 10.9 0.894 0.794 -- -- -- 0.0959 7.73 -- -- -- --
32.97 0.267 10.8 1.09 -- -0.613 -- -- 0.289 -- 25.89 576 -- --
38.89 0.29 10.9 -- 0.815 -0.117 -- -- 0.0146 7.75 20.9 156 -- --
52.62 0.339 10.9 0.904 -- -- -- -- 0.107 -- -- -- -- --
39.66 0.295 10.9 -- 0.801 -- -- -- -0.00374 7.65 -- -- -- --
62.51 0.368 10.9 -- -- -0.457 -- -- 0.14 -- 25.71 533 -- --
74.19 0.402 10.9 -- -- -- -- -- 0.00697 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.65 temperature 20 270 > th dose independent rect. 22 21
20 13.53 temperature 25 270 < th dose dependent rect. 15 19
33 13.66 radiation 30 4320 < th dose independent rect. 7 1
34 13.66 humidity 80 14400 > th dose dependent rect. 17 14
39 13.69 humidity 80 14400 > th dose dependent rect. 17 10
44 13.71 humidity 90 14400 < th dose independent rect. 14 13
47 13.71 humidity 80 14400 > th dose dependent sin 13 NA
70 13.73 temperature 20 90 > th dose independent rect. 13 16
80 13.74 humidity 90 14400 < th dose independent rect. 14 17
82 13.74 wind 1 43200 > th dose dependent rect. 7 3
90 13.75 wind 9 43200 > th dose independent rect. 20 18
93 13.75 wind 1 43200 > th dose dependent rect. 8 1
101 13.76 humidity 90 14400 < th dose independent sin 15 NA
103 13.76 radiation 30 4320 < th dose independent rect. 21 11
127 13.77 wind 9 43200 < th dose independent rect. 20 18
154 13.79 radiation 30 4320 < th dose independent rect. 19 13
183 13.80 wind 9 43200 > th dose independent rect. 17 20
188 13.80 humidity 80 14400 > th dose dependent rect. 22 1
190 13.80 wind 5 43200 > th dose dependent rect. 6 5
194 13.80 wind 9 43200 > th dose dependent rect. 9 13
198 13.80 wind 9 43200 > th dose dependent rect. 9 19
207 13.81 radiation 30 4320 < th dose independent rect. 17 15
211 13.81 wind 5 43200 > th dose dependent rect. 8 3
214 13.81 wind 9 43200 < th dose dependent rect. 6 4
264 13.83 wind 9 43200 < th dose independent rect. 17 19
267 13.83 temperature 20 270 > th dose independent rect. 10 23
285 13.84 temperature 20 10 > th dose independent rect. 24 20
289 13.84 humidity 90 14400 < th dose independent rect. 21 22
292 13.84 wind 9 43200 > th dose dependent sin 20 NA
293 13.84 humidity 90 14400 > th dose dependent rect. 6 1
295 13.84 humidity 80 14400 > th dose dependent rect. 21 3
299 13.84 wind 9 43200 > th dose dependent rect. 9 9
309 13.85 humidity 90 14400 < th dose independent rect. 20 5
313 13.85 wind 9 43200 > th dose independent rect. 20 12
329 13.85 temperature 20 270 > th dose independent rect. 6 23
348 13.86 wind 9 43200 < th dose independent rect. 2 12
349 13.86 atmosphere 995 43200 < th dose independent rect. 4 12
356 13.86 humidity 90 14400 < th dose independent rect. 21 18
368 13.86 humidity 90 14400 < th dose independent rect. 18 21
386 13.86 radiation 40 14400 < th dose dependent rect. 18 7
400 13.87 atmosphere 995 43200 > th dose independent rect. 5 10
401 13.87 wind 9 43200 < th dose independent rect. 20 12
403 13.87 wind 9 43200 < th dose independent rect. 23 15
411 13.87 humidity 90 14400 < th dose independent rect. 4 23
412 13.87 humidity 90 14400 < th dose independent rect. 6 23
429 13.87 wind 7 43200 > th dose dependent rect. 20 17
438 13.88 humidity 90 14400 < th dose independent no NA NA
439 13.88 humidity 90 14400 < th dose independent rect. 21 3
441 13.88 wind 9 43200 > th dose independent rect. 2 12
442 13.88 atmosphere 995 43200 > th dose independent rect. 4 12
457 13.88 humidity 90 14400 < th dose independent rect. 6 21
466 13.88 wind 9 43200 > th dose dependent sin 12 NA
488 13.89 wind 9 43200 > th dose independent rect. 6 8
491 13.89 humidity 90 14400 < th dose independent rect. 20 16
496 13.89 temperature 20 270 < th dose independent rect. 14 20
497 13.89 wind 9 43200 > th dose independent rect. 15 21
516 13.89 wind 9 43200 > th dose dependent rect. 20 11
532 13.90 wind 9 43200 < th dose independent sin 5 NA
534 13.90 atmosphere 995 43200 < th dose independent sin 1 NA
535 13.90 humidity 80 14400 > th dose independent rect. 18 1
536 13.90 wind 9 43200 > th dose independent rect. 9 3
537 13.90 wind 7 43200 > th dose independent rect. 6 5
538 13.90 wind 9 43200 > th dose independent rect. 8 5
554 13.90 humidity 90 14400 < th dose independent rect. 23 23
562 13.90 wind 7 43200 > th dose dependent rect. 6 8
571 13.91 wind 7 43200 < th dose independent rect. 6 5
573 13.91 wind 9 43200 < th dose independent rect. 7 7
579 13.91 atmosphere 995 43200 < th dose independent rect. 5 10
629 13.92 wind 9 43200 > th dose independent sin 5 NA
631 13.92 atmosphere 995 43200 > th dose independent sin 1 NA
633 13.92 wind 9 43200 < th dose independent rect. 9 3
636 13.92 wind 9 43200 < th dose independent rect. 8 5
651 13.92 humidity 80 14400 > th dose dependent no NA NA
660 13.92 wind 7 43200 > th dose dependent rect. 23 15
668 13.92 wind 9 43200 > th dose dependent rect. 20 22
673 13.93 wind 9 43200 > th dose independent sin 10 NA
676 13.93 wind 5 43200 > th dose independent rect. 6 1
679 13.93 wind 3 43200 > th dose independent rect. 2 9
680 13.93 wind 3 43200 < th dose independent rect. 2 9
692 13.93 wind 7 43200 > th dose dependent sin 6 NA
704 13.93 wind 7 43200 > th dose dependent rect. 2 12
718 13.93 humidity 80 14400 > th dose dependent rect. 5 23
719 13.93 humidity 80 14400 > th dose dependent rect. 21 23
724 13.94 wind 5 43200 < th dose independent rect. 6 1
725 13.94 wind 3 43200 < th dose independent rect. 3 2
726 13.94 wind 3 43200 > th dose independent rect. 2 3
730 13.94 wind 9 43200 > th dose independent rect. 20 7
748 13.94 wind 1 43200 > th dose dependent sin 6 NA
751 13.94 wind 9 43200 > th dose dependent rect. 10 4
788 13.95 wind 9 43200 > th dose independent rect. 10 1
790 13.95 wind 9 43200 < th dose independent rect. 10 1
808 13.95 wind 9 43200 < th dose independent rect. 15 20
813 13.95 temperature 30 720 < th dose dependent sin 12 NA
839 13.95 wind 9 43200 > th dose dependent rect. 3 19
857 13.95 humidity 80 14400 > th dose dependent rect. 1 23
869 13.96 humidity 80 14400 < th dose independent rect. 17 2
871 13.96 wind 3 43200 > th dose independent rect. 3 6
895 13.96 wind 9 43200 > th dose dependent no NA NA
957 13.96 wind 9 43200 > th dose dependent rect. 17 23
969 13.97 wind 3 43200 < th dose independent rect. 3 6