BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0346900 Os03g0346900|AK064125
(506 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G47820.1 | chr2:19588122-19590629 FORWARD LENGTH=806 191 9e-49
AT1G09040.1 | chr1:2912362-2915174 FORWARD LENGTH=912 177 1e-44
AT1G09050.1 | chr1:2918031-2920858 FORWARD LENGTH=917 167 1e-41
AT1G55050.1 | chr1:20542779-20545612 FORWARD LENGTH=916 154 8e-38
>AT2G47820.1 | chr2:19588122-19590629 FORWARD LENGTH=806
Length = 805
Score = 191 bits (484), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 139/242 (57%), Gaps = 28/242 (11%)
Query: 3 KSFNDSQTSLMDFVFHLKSVVGIEAFVEAVAIGKGKDDLTGFVLDPSKPNQVLSVQPGMP 62
K+F + + +L D+VF LK+ VGI+ + + IGKGK DLT L+P+K N S +
Sbjct: 250 KAFREDKIALEDYVFTLKNTVGIDMLTQVIGIGKGKRDLTNCALEPTKLNHGASGNSQVR 309
Query: 63 AGKDCSSLASEDIIKFLTGDFRRSKTRSNDLFWEAVWPRLLARGWHSEKPNDVSTTKNCL 122
D L DI+KFLTG++R SKTRS+DLFWEAVWPRLLARGWHSE+P D KN L
Sbjct: 310 IRND---LPIADIVKFLTGEYRMSKTRSSDLFWEAVWPRLLARGWHSEQPKD--GPKNSL 364
Query: 123 VFIVPGIQRFSRSELTKGTHYFDSVSDVLKKVVADPVLLEIEVDGMGNGVNAEKNGFDTA 182
VF+VP +FSR +++KG HYFDS++DVL KV DP LLE++ D G E D
Sbjct: 365 VFLVPEANKFSRRKMSKGNHYFDSLTDVLNKVALDPTLLELDEDLERKGSKEEVIKNDPP 424
Query: 183 MKLNQDVPFDG--------------------YHELPKFTIIDTSLVQGEEPSQVRELRNL 222
L + FD E+ FTIIDTS E ++ELR+L
Sbjct: 425 TNLEE---FDDSSPNSKKKKKYLQPRSKTRKIQEVMLFTIIDTSETNSIEGCTLKELRSL 481
Query: 223 PA 224
P
Sbjct: 482 PV 483
>AT1G09040.1 | chr1:2912362-2915174 FORWARD LENGTH=912
Length = 911
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 145/248 (58%), Gaps = 28/248 (11%)
Query: 3 KSFNDSQTSLMDFVFHLKSVVGIEAFVEAVAIGKGKDDLTGFVLDPSKPNQVLSVQPG-- 60
KSF + +L +V +K++VG+ V+AVAIGK K+DLT P K +V
Sbjct: 245 KSFAEGTITLEKYVSAVKNLVGLRLLVDAVAIGKEKEDLTVPTSTPMKTKPWFTVSSKSS 304
Query: 61 -MPAGKDCSSLASEDIIKFLTGDFRRSKTRSNDLFWEAVWPRLLARGWHSEKPNDVS--T 117
+P D +SL S II LTG R SK R ND+FW AVWPRLLARGWHS++P D
Sbjct: 305 LVPGEGDYNSLTSAGIINQLTGCSRLSKARCNDIFWGAVWPRLLARGWHSQQPEDRGYFK 364
Query: 118 TKNCLVFIVPGIQRFSRSELTKGTHYFDSVSDVLKKVVADPVLLEIEVDGMGNGVNAEKN 177
+K+ +VFIVPG+++FSR EL KG HYFDSVSD+L KVV++P LLE E G+ ++++K+
Sbjct: 365 SKDYIVFIVPGVKKFSRQELVKGDHYFDSVSDILTKVVSEPELLENETGGVAAELSSDKS 424
Query: 178 GFDTAMKLNQDVPFDG----YHELP---------KFTIIDTSLVQGEEPSQVRELRNLPA 224
+ VP D Y P KFT++DTSL G ++ +LRNL A
Sbjct: 425 D-------EESVPSDSLRHRYLRSPCSNRGTLGMKFTVVDTSLATG---GKLCDLRNLNA 474
Query: 225 DANISFGP 232
+ + P
Sbjct: 475 ECLVVSEP 482
>AT1G09050.1 | chr1:2918031-2920858 FORWARD LENGTH=917
Length = 916
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 138/241 (57%), Gaps = 14/241 (5%)
Query: 3 KSFNDSQTSLMDFVFHLKSVVGIEAFVEAVAIGKGKDDLTGFVLDPSKPNQVLSVQPG-- 60
KSF + +L +V +K++VG+ V+AVAIGK K+DLT P K +V
Sbjct: 245 KSFAEGTITLEKYVSAVKNLVGLRLLVDAVAIGKEKEDLTVPTSTPMKTKPWFTVSSKSS 304
Query: 61 -MPAGKDCSSLASEDIIKFLTGDFRRSKTRSNDLFWEAVWPRLLARGWHSEKPNDVS--T 117
+P D +SL S II LTG R SK R ND+FW AVWPRLLARGW S++P D
Sbjct: 305 LVPGEGDYNSLTSAGIINQLTGCSRLSKARCNDIFWGAVWPRLLARGWRSQQPEDRGYFK 364
Query: 118 TKNCLVFIVPGIQRFSRSELTKGTHYFDSVSDVLKKVVADPVLLEIEVDGMG--NGVNAE 175
+K+ +VFIVPG+++FSR EL KG HYFDSVSD+L KVV++P LLE E G+ N +
Sbjct: 365 SKDYIVFIVPGVKKFSRQELVKGDHYFDSVSDILTKVVSEPELLENETGGVAAENPSDQS 424
Query: 176 KNGFDTAMKLNQDV---PFDGYHEL-PKFTIIDTSLVQGEEPSQVRELRNLPADANISFG 231
+ L P L KFT++DTSL G ++ +LRNL A+ +
Sbjct: 425 DEESSPSDSLRHRYLRSPCSNRGTLGMKFTVVDTSLATG---GKLCDLRNLNAECLVVSE 481
Query: 232 P 232
P
Sbjct: 482 P 482
>AT1G55050.1 | chr1:20542779-20545612 FORWARD LENGTH=916
Length = 915
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 104/157 (66%), Gaps = 3/157 (1%)
Query: 3 KSFNDSQTSLMDFVFHLKSVVGIEAFVEAVAIGKGKDDLTGFVLDPSKPNQVLSVQPGMP 62
KSF + + SL +++ +K +VG+ VEAVAIGK K+DLT P Q V +P
Sbjct: 228 KSFAEGKKSLEEYINAVKKLVGLRCLVEAVAIGKDKEDLTVLTTKPVDVEQWFRVSSAVP 287
Query: 63 AG-KDCSSLASEDIIKFLTGDFRRSKTRSNDLFWEAVWPRLLARGWHSEKPNDVS--TTK 119
AG + +SL E II+ L+G R SK R ND+FW+AVWPRLL RGW SE P D +K
Sbjct: 288 AGLGEYNSLTVEGIIEKLSGGSRVSKARCNDIFWDAVWPRLLHRGWRSELPKDQGYIKSK 347
Query: 120 NCLVFIVPGIQRFSRSELTKGTHYFDSVSDVLKKVVA 156
+VF+VPG+++FSR +L K HYFDS+SD+LKKVV+
Sbjct: 348 EHIVFLVPGVKKFSRKKLVKRDHYFDSISDILKKVVS 384
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,032,393
Number of extensions: 471226
Number of successful extensions: 1067
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1056
Number of HSP's successfully gapped: 4
Length of query: 506
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 403
Effective length of database: 8,282,721
Effective search space: 3337936563
Effective search space used: 3337936563
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)