BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0560300 Os07g0560300|AK101241
(587 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0560300 Armadillo-like helical domain containing protein 1000 0.0
Os06g0683950 Armadillo-like helical domain containing protein 343 3e-94
Os09g0135800 Armadillo-like helical domain containing protein 154 1e-37
Os10g0522601 Armadillo-like helical domain containing protein 137 2e-32
Os03g0116900 Armadillo-like helical domain containing protein 125 1e-28
>Os07g0560300 Armadillo-like helical domain containing protein
Length = 587
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/587 (87%), Positives = 516/587 (87%)
Query: 1 MGXXXXXXXXXXRDEQGSVTAALDAITGLVSASLAASLFPYKWQLIRDRLNRLHAXXXXX 60
MG RDEQGSVTAALDAITGLVSASLAASLFPYKWQLIRDRLNRLHA
Sbjct: 1 MGEEAATAAAAERDEQGSVTAALDAITGLVSASLAASLFPYKWQLIRDRLNRLHAGLADI 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXREASELVPRSQGRHYGGGKLRLRSDLDVVAGTLDA 120
REASELVPRSQGRHYGGGKLRLRSDLDVVAGTLDA
Sbjct: 61 ATGGGEGGEGHGALAGVLGAVVETAREASELVPRSQGRHYGGGKLRLRSDLDVVAGTLDA 120
Query: 121 LVARVDEVYASGALTRARALVVSRPCAGASRDDVRFYVRDLFARLRVXXXXXXXXXXXXX 180
LVARVDEVYASGALTRARALVVSRPCAGASRDDVRFYVRDLFARLRV
Sbjct: 121 LVARVDEVYASGALTRARALVVSRPCAGASRDDVRFYVRDLFARLRVGGAEMRGEAAAAL 180
Query: 181 XXVLHDDEKCXXXXXXXXXXXXXXXXWLLECPDACVQEEVLEAVSVIAGFEAYRGDLVVG 240
VLHDDEKC WLLECPDACVQEEVLEAVSVIAGFEAYRGDLVVG
Sbjct: 181 AEVLHDDEKCVRVVVSDVADGVCVLVWLLECPDACVQEEVLEAVSVIAGFEAYRGDLVVG 240
Query: 241 GVIAPVIRVLDSAGDRPSAKERAARLLCKLTENSDNAWAVAAHGGVTALLNVCADYTASG 300
GVIAPVIRVLDSAGDRPSAKERAARLLCKLTENSDNAWAVAAHGGVTALLNVCADYTASG
Sbjct: 241 GVIAPVIRVLDSAGDRPSAKERAARLLCKLTENSDNAWAVAAHGGVTALLNVCADYTASG 300
Query: 301 GELVCAACRVLRSLAGVDEIRKYMVAEAGAAPVLVSLCRGAADEAAQIQAMELLAAIASG 360
GELVCAACRVLRSLAGVDEIRKYMVAEAGAAPVLVSLCRGAADEAAQIQAMELLAAIASG
Sbjct: 301 GELVCAACRVLRSLAGVDEIRKYMVAEAGAAPVLVSLCRGAADEAAQIQAMELLAAIASG 360
Query: 361 DSSVREAVLQEGAVESLVSVLDPASPRSSKAREVALRAIDALCLSSPPLTSRLVAAGFLD 420
DSSVREAVLQEGAVESLVSVLDPASPRSSKAREVALRAIDALCLSSPPLTSRLVAAGFLD
Sbjct: 361 DSSVREAVLQEGAVESLVSVLDPASPRSSKAREVALRAIDALCLSSPPLTSRLVAAGFLD 420
Query: 421 RVLVFLRSGDATLQHCALKAAHRLCHASEDTKKAMGDAGFMPELVSILHAAKSLEARDMA 480
RVLVFLRSGDATLQHCALKAAHRLCHASEDTKKAMGDAGFMPELVSILHAAKSLEARDMA
Sbjct: 421 RVLVFLRSGDATLQHCALKAAHRLCHASEDTKKAMGDAGFMPELVSILHAAKSLEARDMA 480
Query: 481 AEALCAMVSVHRNRKRFVQEDRNVAQVLQLLGPDDEKLSPAKRFLLSTLMHLSDSTSGRR 540
AEALCAMVSVHRNRKRFVQEDRNVAQVLQLLGPDDEKLSPAKRFLLSTLMHLSDSTSGRR
Sbjct: 481 AEALCAMVSVHRNRKRFVQEDRNVAQVLQLLGPDDEKLSPAKRFLLSTLMHLSDSTSGRR 540
Query: 541 KIMSSEHLRNLERLAETNVTDAKKIVKKLGGSKLRNIFHGIWSLQKA 587
KIMSSEHLRNLERLAETNVTDAKKIVKKLGGSKLRNIFHGIWSLQKA
Sbjct: 541 KIMSSEHLRNLERLAETNVTDAKKIVKKLGGSKLRNIFHGIWSLQKA 587
>Os06g0683950 Armadillo-like helical domain containing protein
Length = 599
Score = 343 bits (879), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 219/574 (38%), Positives = 323/574 (56%), Gaps = 23/574 (4%)
Query: 29 LVSASLAASL--FPYKWQLIRDRLNRLHAX------XXXXXXXXXXXXXXXXXXXXXXXX 80
+ S+SL S+ FP KWQ I+D+L +L +
Sbjct: 31 MASSSLTCSIPQFPAKWQSIKDKLRQLCSGLDSLCGSVGFGVDVGGDEERHGVLVQLVAS 90
Query: 81 XXXXXREASELVPRSQGRHYGGGKLRLRSDLDVVAGTLDALVARVDEVYASGALTRARAL 140
R + + Y GG+LRLRSDLD ++ L+A + ++ E+ +SG + ++A+
Sbjct: 91 ASATVRSIQAMASQCGDGTYKGGRLRLRSDLDNLSSKLEAHMKQLREMASSGMPSPSQAI 150
Query: 141 VVSRPCAGASRDDVRFYVRDLFARLRVXXXXXXXXXXXXXXXVLHDDEKCXXXXXXXXXX 200
V RP A A + FY+RDLF+R+R+ +L +DE C
Sbjct: 151 VAVRPSADAGAGEKMFYMRDLFSRVRIGGSVQRSQSLATIGELLAEDEVCVKIVAVDIDD 210
Query: 201 XXXXXXWLLECPDACVQEEVLEAVSVIAGFEAYRGDLVVGGVIAPVIRVLD--------- 251
LE DA +QEE AV+++A F++YRG LV GVIAP++++LD
Sbjct: 211 GVALLTGFLESSDARLQEEAAGAVAMVASFDSYRGMLVKAGVIAPLVQLLDDAAATAAVA 270
Query: 252 -SAGDRPSAKERAARLLCKLTENSDNAWAVAAHGGVTALLNVCADYTASGGELVCAACRV 310
G AKERAA+ L +LTENSDN WAV AHGG+T LL+ C D SGG+LV ++ V
Sbjct: 271 AGGGATAVAKERAAQALRELTENSDNVWAVCAHGGLTTLLHACGD-AGSGGKLVASSFAV 329
Query: 311 LRSLAGVDEIRKYMVAEAGAAPVLVSLCRGAADEAAQIQAMELLAAIASGDSSVREAVLQ 370
LR+L+ V+E++ +M AE G LV L + +EA ++ A+ELL A+A D+ VRE +
Sbjct: 330 LRNLSRVEEVKVFM-AEQGVVTELVKLSQ-KKEEARKLGAVELLHAMALDDADVREEAVS 387
Query: 371 EGAVESLVSVLDPASPRSSKAREVALRAIDALCLSSPPLTSRLVAAGFLDRVLVFLRSGD 430
G ++SL+ ++ P P S KAREVAL AI C SS L+++ L +L +L +GD
Sbjct: 388 MGVIQSLLQLIYPDLPYSYKAREVALAAIWFFCFSSVNSIDDLISSDVLGWLLFYLNNGD 447
Query: 431 ATLQHCALKAAHRLCHASEDTKKAMGDAGFMPELVSILHAAKSLEARDMAAEALCAMVSV 490
+ C LK L SE+ + MG AG++ L S+L AKS R+MAA+ L +++ +
Sbjct: 448 YAVLECTLKILRHLSEVSEEYNRMMGRAGYLSALSSLL-GAKSCRVREMAAQVLSSLLLL 506
Query: 491 HRNRKRFVQEDRNVAQVLQLLGPDDEKLSPAKRFLLSTLMHLSDSTSGRRKIMSSEHLRN 550
H NR F+Q+ N+ ++LQLL P + KL AK +LS ++ L+D+ SGR+KI+SSEH +
Sbjct: 507 HPNRVIFIQDGDNLNRLLQLLDPAEGKL-VAKDLILSAILSLADTNSGRKKIISSEHFSS 565
Query: 551 LERLAETNVTDAKKIVKKLGGSKLRNIFHGIWSL 584
L+ LA+T DAKK+VKKLG ++ + IF IWS+
Sbjct: 566 LKELADTGDFDAKKVVKKLGTNRFQTIFSKIWSV 599
>Os09g0135800 Armadillo-like helical domain containing protein
Length = 583
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 146/513 (28%), Positives = 252/513 (49%), Gaps = 27/513 (5%)
Query: 86 REASELVPRSQGRHYGGGKLRLRSDLDVVAGTLDALVARVDEVYASGAL------TRARA 139
R L R Q GG+LRL+SDLD+ A +L L+ + + SG L + A
Sbjct: 82 RSLQALSARCQDPSLPGGRLRLQSDLDIAASSLSLLLHDLSLLLRSGILYVDPSASSPNA 141
Query: 140 LVVSRPCAGASRDDVRFYVRDLFARLRVXXXXXXXXXXXXXXXVLHDDEKCXXXXXXXXX 199
+V+ P ASR D ++RD FARL++ +L +D
Sbjct: 142 IVLQVPAPAASRADKSLFIRDAFARLQIGGLDLKLKALASLLDLLANDIAAESAHIVATD 201
Query: 200 XXXXXXXWLLECPD-ACVQEEVLEAVSVIA-GFEAYRGDLVVGGVIAPVIRVLDSAGDRP 257
LL+ + +++ V+ +A A R + G + P++RVLDS G P
Sbjct: 202 GDVAALLRLLDASSHSALRDRAAATVAHLATACVASRKVVFDEGGLGPLLRVLDS-GSAP 260
Query: 258 SAKERAARLLCKLTENSDNAWAVAAHGGVTALLNVCADYTASGGELVCA-ACRVLRSLAG 316
+ +ERA + +T + +AWAVAA+GGV L+N C SG +V A A L+++A
Sbjct: 261 ATRERAVAAIEAITADVGSAWAVAAYGGVPILINAC--RPGSGSPVVQALAVAALKNVAS 318
Query: 317 VDEIRKYMVAEAGAAPVLVSLCRGAADEAAQIQAMELLAAIASGDSSVREAVLQEGAVES 376
++++R +V E G P+LV L +A + A+ + + + GD ++ ++Q GA+
Sbjct: 319 IEDVRSALVEEGGL-PILVDLLASGTIDAQKGSALCIWSLASLGDHEIQYQIVQAGALLP 377
Query: 377 LVSVLDPASPRSSKAREVALRAIDALCLSSPPLTSRLVAAG---FLDRVLVFLRSGDATL 433
L+ L AS + LRAI AL + P +R + + F + R G L
Sbjct: 378 LLQALHTAS--GLDLHDTVLRAIHALAVV--PAAARTLCSSPLFFAQLTDLMCRGGSILL 433
Query: 434 QHCALKAAHRLCHA-SEDTKKAMGDAGFMPELVSILHAAKSLEARDMAAEALCAMVSVHR 492
Q A L S+DTK+ M M LV ++ AK ++ A AL A++++
Sbjct: 434 QQMAADMVAELAPGVSDDTKRCMAPCICM--LVKMMETAKPATVQESAGRALLALMTLKF 491
Query: 493 NRKRFVQEDRNVAQVLQLLGPDDEKLSPAKRFLLSTLMHLS--DSTSGRRKIMSSEHLRN 550
NRK V+++++V ++L +L P +E++ K++ +S ++ L+ RR++ S ++
Sbjct: 492 NRKELVRDEKSVTRLLHMLDPRNEEID--KKYPVSVVLALALGGGNGTRRRLADSGICQH 549
Query: 551 LERLAETNVTDAKKIVKKLGGSKLRNIFHGIWS 583
L++LAE V AKK ++++ G++L+++ W+
Sbjct: 550 LQKLAEAEVPGAKKALQRISGNRLKSLLSRGWN 582
>Os10g0522601 Armadillo-like helical domain containing protein
Length = 453
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 139/474 (29%), Positives = 238/474 (50%), Gaps = 26/474 (5%)
Query: 107 LRSDLDVVAGTLDALVARVDEVYASGALTRARALVVSRPCAGASRDDVRFYVRDLFARLR 166
++SDLD +AG LD + + +G L+ A V+ A++ DVR +L ARL+
Sbjct: 1 MQSDLDALAGKLDLNLRDCALLIKTGVLSDATVPPVAPAAEAAAQTDVR----ELLARLQ 56
Query: 167 VXXXXXXXXXXXXXXXVLHDDEKCXXXXXXXXXXXXXXXXWLLECPDACVQEEVLEAVSV 226
+ L +DEK P ++E+ + +
Sbjct: 57 IGHAEAKHRAVDGLLDALREDEKSVLSALGRGNVAALVQLLTATAPK--IREKAATVLCL 114
Query: 227 IAGFEAYRGDLVVGGVIAPVIRVLDSAGDRPSAKERAARLLCKLTENSDNAWAVAAHGGV 286
+A + LV G + P+IR+++S +E+A L +L+ + D A A+ H GV
Sbjct: 115 LAESGSCECLLVSEGALPPLIRLVESGS--LVGREKAVITLQRLSMSPDIARAIVGHSGV 172
Query: 287 TALLNVC--ADYTASGGELVCAACRVLRSLAGVDEIRKYMVAEAGAAPVLVSLCRGAADE 344
L+++C D + AA L++L+ V E+R+ + AE G V+V+L
Sbjct: 173 RPLIDICQTGDSISQS-----AAAGALKNLSAVPEVRQAL-AEEGIVRVMVNLLDCGVVL 226
Query: 345 AAQIQAMELLAAIASGDSSVREAVLQEGAVESLVSVLDPASPRSSKAREVALRAIDALCL 404
+ A E L ++ S + +R AV+ EG + SL++ LD P+ S ALR + +
Sbjct: 227 GCKEYAAECLQSLTSSNDGLRRAVVSEGGLRSLLAYLDGPLPQESAVG--ALRNL----V 280
Query: 405 SSPPLTSRLVAAGFLDRVLVFLRSGDATLQHCALKAAHRLCHASEDTKKAMGDAGFMPEL 464
SS LV+ G L R++ LR G Q A A R+ +SE K+ +G+ G MP L
Sbjct: 281 SSAISPDSLVSLGVLPRLVHVLREGSVGAQQAAAAAICRVSSSSE-MKRLVGEHGCMPLL 339
Query: 465 VSILHAAKSLEARDMAAEALCAMVSVHRNRKRFVQEDRNVAQVLQLLGPDDEKLSPAKRF 524
V +L A KS AR++AA+A+ +++S N + +++++V ++QLL P + + AK++
Sbjct: 340 VRLLEA-KSNGAREVAAQAVASLMSCLANARDIKKDEKSVPNLVQLLEPSPQ--NTAKKY 396
Query: 525 LLSTLMHLSDSTSGRRKIMSSEHLRNLERLAETNVTDAKKIVKKLGGSKLRNIF 578
+S L+ LS S ++ ++S + L++L+E +V AKK+++KL KLRN+F
Sbjct: 397 AISCLLTLSASKRCKKLMISHGAIGYLKKLSEMDVAGAKKLLEKLERGKLRNLF 450
>Os03g0116900 Armadillo-like helical domain containing protein
Length = 563
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 132/476 (27%), Positives = 231/476 (48%), Gaps = 19/476 (3%)
Query: 103 GKLRLRSDLDVVAGTLDALVARVDEVYASGALTRARALVVSRPCAGASRDDVRFYVRDLF 162
GKL+++S +D +AG LD + + +G L+ A A ++ + VR+L
Sbjct: 104 GKLQMQSAIDALAGKLDLNLRDCALLVKTGVLSDAFTPPPPTDEATSTATAAQADVRELL 163
Query: 163 ARLRVXXXXXXXXXXXXXXXVLHDDEKCXXXXXXXXXXXXXXXXWLLECPDACVQEEVLE 222
ARL++ L+ DEK LL P V+E+
Sbjct: 164 ARLQIGHTEAKSLAVDGLLEALNKDEK--SVLSVLGRANVAALVQLLTAPATKVREKAAT 221
Query: 223 AVSVIAGFEAYRGDLVVGGVIAPVIRVLDSAGDRPSAKERAARLLCKLTENSDNAWAVAA 282
+ +A G LV G + P+IR+ +S +E+A L +L+ +SD A A+A
Sbjct: 222 VICQLAESGGCEGLLVSEGALPPLIRLAESGSLL--GREKAVITLQRLSMSSDTARAIAG 279
Query: 283 HGGVTALLNVCADYTASGGELVCAACRVLRSLAGVDEIRKYMVAEAGAAPVLVSLCRGAA 342
HGG L+ +C + AA L++L+ V E+R+ + A+ G V+V L
Sbjct: 280 HGGARPLIEMCQTGDSISQS---AAAGALKNLSAVPEVRQAL-ADEGIVRVMVGLLDCGT 335
Query: 343 DEAAQIQAMELLAAIASGDSSVREAVLQEGAVESLVSVLDPASPRSSKAREVALRAIDAL 402
++ A + L + S S R AV+ +G + SL+ LD P+ S A+ A+ L
Sbjct: 336 VLGSKEHAADCLQNLTSSSDSFRRAVVSDGGLRSLLVYLDGPLPQES-----AVSALRNL 390
Query: 403 CLSSPPLTSRLVAAGFLDRVLVFLRSGDATLQHCALKAAHRLCHASEDTKKAMGDAGFMP 462
+ P LV+ G L R+ LR G Q A A R+ + D K+ +G+ G +P
Sbjct: 391 VSAVSP--DSLVSLGVLPRLAHVLRVGSTGAQQAAAAAICRI-STTTDMKRVVGEHGCVP 447
Query: 463 ELVSILHAAKSLEARDMAAEALCAMVSVHRNRKRFVQEDRNVAQVLQLLGPDDEKLSPAK 522
LV +L A KS AR++AA+A+ ++V N + ++ ++V ++QLL P + AK
Sbjct: 448 LLVRMLDA-KSNGAREVAAQAMASLVGYPPNAREVRRDGKSVPCLVQLLDPSPA--NTAK 504
Query: 523 RFLLSTLMHLSDSTSGRRKIMSSEHLRNLERLAETNVTDAKKIVKKLGGSKLRNIF 578
++ ++ L+ L+ + ++ ++S + L++L++ +V AKK++++L KLR++F
Sbjct: 505 KYAIACLLSLAAAKRCKKLMISHGAIGYLKKLSDMDVAGAKKLLERLERGKLRSLF 560
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,492,933
Number of extensions: 596852
Number of successful extensions: 1979
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1950
Number of HSP's successfully gapped: 8
Length of query: 587
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 481
Effective length of database: 11,501,117
Effective search space: 5532037277
Effective search space used: 5532037277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)