BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0555200 Os07g0555200|AK066706
(814 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0555200 Similar to Eukaryotic translation initiation f... 1536 0.0
Os02g0611500 Similar to Eukaryotic initiation factor-like p... 235 8e-62
Os04g0499300 Initiation factor eIF-4 gamma, middle domain c... 134 3e-31
>Os07g0555200 Similar to Eukaryotic translation initiation factor 4G
Length = 814
Score = 1536 bits (3976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 753/814 (92%), Positives = 753/814 (92%)
Query: 1 MGEDEGKKKVELDDWEDAAEMSTPKLERSDSSNQTTEANGRKRYSRDFLLTLAQSCTNLP 60
MGEDEGKKKVELDDWEDAAEMSTPKLERSDSSNQTTEANGRKRYSRDFLLTLAQSCTNLP
Sbjct: 1 MGEDEGKKKVELDDWEDAAEMSTPKLERSDSSNQTTEANGRKRYSRDFLLTLAQSCTNLP 60
Query: 61 VGFQMIEYASVLFPNLAGKSYVVDHPSPGRGADRPASRGDRRGVVIEDDRWGKSGHLFGS 120
VGFQMIEYASVLFPNLAGKSYVVDHPSPGRGADRPASRGDRRGVVIEDDRWGKSGHLFGS
Sbjct: 61 VGFQMIEYASVLFPNLAGKSYVVDHPSPGRGADRPASRGDRRGVVIEDDRWGKSGHLFGS 120
Query: 121 GRDMSMDNGPPTMNHRGAPGVMRNPRGGLINVGPVAPQMSRSGSDADRWQQKGIFPSPVT 180
GRDMSMDNGPPTMNHRGAPGVMRNPRGGLINVGPVAPQMSRSGSDADRWQQKGIFPSPVT
Sbjct: 121 GRDMSMDNGPPTMNHRGAPGVMRNPRGGLINVGPVAPQMSRSGSDADRWQQKGIFPSPVT 180
Query: 181 PMQVMHKAEKKYVVGKVSDEEEAKQRQLKAILNKLTPQNFEKLFEKVKEVNIDNVATLTG 240
PMQVMHKAEKKYVVGKVSDEEEAKQRQLKAILNKLTPQNFEKLFEKVKEVNIDNVATLTG
Sbjct: 181 PMQVMHKAEKKYVVGKVSDEEEAKQRQLKAILNKLTPQNFEKLFEKVKEVNIDNVATLTG 240
Query: 241 VISQIFDKALMEPTFCEMYANFCFHLAGALPDFSEDNEKITFKRLLLNKCQXXXXXXXXX 300
VISQIFDKALMEPTFCEMYANFCFHLAGALPDFSEDNEKITFKRLLLNKCQ
Sbjct: 241 VISQIFDKALMEPTFCEMYANFCFHLAGALPDFSEDNEKITFKRLLLNKCQEEFERGERE 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLGNIRLIGELYKKRMLTERIMHECIKKLL 360
MLGNIRLIGELYKKRMLTERIMHECIKKLL
Sbjct: 301 EAEADKTEEEGEIKQTKEEREEKRIRARRRMLGNIRLIGELYKKRMLTERIMHECIKKLL 360
Query: 361 GNYQNPDEENIEALCKLMSTIGEMIDHAKAKEHMDAYFDIMLKLSTSQQLSSRVRFMLRD 420
GNYQNPDEENIEALCKLMSTIGEMIDHAKAKEHMDAYFDIMLKLSTSQQLSSRVRFMLRD
Sbjct: 361 GNYQNPDEENIEALCKLMSTIGEMIDHAKAKEHMDAYFDIMLKLSTSQQLSSRVRFMLRD 420
Query: 421 SIDLRKNKWQQRRKVEGPKKIDEVHRDAAQERHAQSSRLAXXXXXXXXXXXXAAPMDYGP 480
SIDLRKNKWQQRRKVEGPKKIDEVHRDAAQERHAQSSRLA AAPMDYGP
Sbjct: 421 SIDLRKNKWQQRRKVEGPKKIDEVHRDAAQERHAQSSRLARGSVVGSGPRRGAAPMDYGP 480
Query: 481 RGXXXXXXXXXXQQVGHRGMPSHSRGFGTQDIRFEERSPLDHRTTVLPPRKDEAITLGPQ 540
RG QQVGHRGMPSHSRGFGTQDIRFEERSPLDHRTTVLPPRKDEAITLGPQ
Sbjct: 481 RGSAAALASPSSQQVGHRGMPSHSRGFGTQDIRFEERSPLDHRTTVLPPRKDEAITLGPQ 540
Query: 541 GGLARGMSIRGQPLISNAELSSADSRRMVSGPNGYNSASTAREEPGSRIPDRSGRIAPNT 600
GGLARGMSIRGQPLISNAELSSADSRRMVSGPNGYNSASTAREEPGSRIPDRSGRIAPNT
Sbjct: 541 GGLARGMSIRGQPLISNAELSSADSRRMVSGPNGYNSASTAREEPGSRIPDRSGRIAPNT 600
Query: 601 QFAGPSNRPASQEGRSGNKLYSEDDLREKSISAIREYYSAKDEKEVALCIEELNAPSFYP 660
QFAGPSNRPASQEGRSGNKLYSEDDLREKSISAIREYYSAKDEKEVALCIEELNAPSFYP
Sbjct: 601 QFAGPSNRPASQEGRSGNKLYSEDDLREKSISAIREYYSAKDEKEVALCIEELNAPSFYP 660
Query: 661 SVVSLWVNDSFERKDMERELLTKLFVSLCNSRNNLLSKSHLTAGLATVLGSLEDALSDAP 720
SVVSLWVNDSFERKDMERELLTKLFVSLCNSRNNLLSKSHLTAGLATVLGSLEDALSDAP
Sbjct: 661 SVVSLWVNDSFERKDMERELLTKLFVSLCNSRNNLLSKSHLTAGLATVLGSLEDALSDAP 720
Query: 721 RAAEYLGRLLARFVVESILSLQEVGTLIEKGGEEPGELVHHGIGADVLGAVLESIKVEKG 780
RAAEYLGRLLARFVVESILSLQEVGTLIEKGGEEPGELVHHGIGADVLGAVLESIKVEKG
Sbjct: 721 RAAEYLGRLLARFVVESILSLQEVGTLIEKGGEEPGELVHHGIGADVLGAVLESIKVEKG 780
Query: 781 DSFLNEAKASSNLKLEDFRPQHLKRSKLDAFMKA 814
DSFLNEAKASSNLKLEDFRPQHLKRSKLDAFMKA
Sbjct: 781 DSFLNEAKASSNLKLEDFRPQHLKRSKLDAFMKA 814
>Os02g0611500 Similar to Eukaryotic initiation factor-like protein
Length = 780
Score = 235 bits (600), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 177/581 (30%), Positives = 271/581 (46%), Gaps = 35/581 (6%)
Query: 179 VTPMQVMHKAEKKYVV--GKVSDEEEAKQRQLKAILNKLTPQNFEKLFEKVKEVNIDNVA 236
V P + KAE + + G +S++E + +K ILNKLTP+ F+ L ++ E I
Sbjct: 181 VGPAPALVKAEVPWSIQRGNLSNKERV-LKTVKGILNKLTPEKFDLLKGQLIEAGITTAD 239
Query: 237 TLTGVISQIFDKALMEPTFCEMYANFCFHLAGALPDFSEDN---EKITFKRLLLNKCQXX 293
L VIS IF+KA++EPTFC MYA CF L LP F + ++ITFKR+LLN CQ
Sbjct: 240 ILKDVISLIFEKAVLEPTFCPMYAQLCFDLNEKLPSFPSEEPGGKEITFKRVLLNNCQEA 299
Query: 294 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLGNIRLIGELYKKRMLTERIMH 353
LGNIRL+GEL K++M+ E+I+H
Sbjct: 300 FEGADNLRSEVNKLTGLDQEMERRDKERLVKLRT----LGNIRLVGELLKQKMVPEKIVH 355
Query: 354 ECIKKLLGNYQN--PDEENIEALCKLMSTIGEMID-HAKAKEHMDAYFDIMLKLSTSQQL 410
+++LLG+ N P EEN+EA+C+ +TIG+ +D + K++ D YF+ + L+T+ QL
Sbjct: 356 HIVQELLGSESNRCPAEENVEAICQFFNTIGKQLDENPKSRRFNDVYFNRLKDLTTNSQL 415
Query: 411 SSRVRFMLRDSIDLRKNKWQQRRKVEGPKKIDEVHRDAAQERHAQSSRLAXXXXXXXXXX 470
+SR+RFM RD +DLR N+W RR+ KKI E+HR+A + A
Sbjct: 416 ASRLRFMARDVLDLRSNQWVPRREEMKAKKISEIHREAENNLGLRPGSTA-SIRTGRTGT 474
Query: 471 XXAAPMDYGPRGXXXXXXXXXXQQV-GHRGMPSHSRGFGTQDIRFEERSPLDHRTTVLPP 529
P+ G + G R MP G G+ D + H + P
Sbjct: 475 GGGGPLSPGAFSMNQPGIVGMLPGMPGARKMPGMP-GLGSDDWE------VPHSRS--KP 525
Query: 530 RKDEAITLGPQGGLARGMSIRGQPLISNAELSSADSRRMVSGPNGYNSASTAREEPGSRI 589
R D L P S+ +P +N+ L S ++SG S G +
Sbjct: 526 RADPVRNLTP--------SLANKPSPNNSRLLPQGSAALISGKTSALVGSGGPLSHGLVV 577
Query: 590 PDRSGRIAPNTQFAGPSNRPASQEGRSGNKLYSEDDLREKSISAIREYYSAKDEKEVALC 649
P + PS P ++ + K S +L++K+IS ++EY+ E C
Sbjct: 578 TPSQTTGPPKSLIPAPSVDPIVEQPAAAPK-PSSTELQKKTISLLKEYFHILLLHEAQQC 636
Query: 650 IEELNAPSFYPSVVSLWVNDSFERKDMERELLTKLFVSLCNSRNNLLSKSHLTAGLATVL 709
IEEL +P +YP VV +N + ++ + L +L L N N+ + L G
Sbjct: 637 IEELKSPDYYPEVVKEAINLALDKGTNSIDPLLRLLEHLYN--KNVFKATDLETGCLLYS 694
Query: 710 GSLEDALSDAPRAAEYLGRLLARFVVESILSLQEVGTLIEK 750
L++ D P+A + G ++ R V+ LS++ V ++K
Sbjct: 695 SLLDELAIDLPKAPVHFGEVIGRLVLSHCLSIEVVEDTLKK 735
>Os04g0499300 Initiation factor eIF-4 gamma, middle domain containing protein
Length = 480
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 121/437 (27%), Positives = 190/437 (43%), Gaps = 44/437 (10%)
Query: 332 LGNIRLIGELYKKRMLTERIMHECIKKLLGNYQN----PDEENIEALCKLMSTIGEMID- 386
LGNIRLIGEL K++M+ E+I+H +++LLG+ + P+EEN+EA+C+ +TIG+ +D
Sbjct: 15 LGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEAICQFFNTIGKQLDE 74
Query: 387 HAKAKEHMDAYFDIMLKLSTSQQLSSRVRFMLRDSIDLRKNKWQQRRKVEGPKKIDEVHR 446
+ K++ D YF M +L+T+ QL+ R+RFM+RD +DLR N W RR E KI +
Sbjct: 75 NPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPRR--EEVNKITLIKA 132
Query: 447 DAAQERHAQSSRLAXXXXXXXXXXXXAAPMDYGPRGXXXXXXXXXXQQVGHRGMPSHSRG 506
E H ++ + GP GMP
Sbjct: 133 KTISEIHDEAMKTLGLRPGATGLTRNGRNAPGGPLSPGGFPMNRPGTGGMMPGMP----- 187
Query: 507 FGTQDIRFEERSP----LDHRTTVLPPRKDEAITLGPQGGLARGMSIRGQ-PLISNA--- 558
GT + + P LD+ +P K + RG S+R Q PL++
Sbjct: 188 -GTPGMPGSRKMPGMPGLDNDNWEVPRSKS----------MPRGDSLRNQGPLLNKPSSI 236
Query: 559 -ELSSADSRRMVSGPNGY--NSASTAREEPGSRIPDRSGRIAPNTQFAGPSNRPAS---- 611
+ SS +SR + G SA P SR + PS +P S
Sbjct: 237 NKPSSINSRLLPHGSGALIGKSALLGSGGPPSRPSSLMASLTHTPAQTAPSPKPVSAAPA 296
Query: 612 ----QEGRSGNKLYSEDDLREKSISAIREYYSAKDEKEVALCIEELNAPSFYPSVVSLWV 667
+ +G+ +++K++S + EY+ + E CIEEL P +Y +V +
Sbjct: 297 VVPVTDKAAGSSHEMPAAVQKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAI 356
Query: 668 NDSFERKDMERELLTKLFVSLCNSRNNLLSKSHLTAGLATVLGSLEDALSDAPRAAEYLG 727
N + ++ + L +L L + + L G LED D P A G
Sbjct: 357 NLALDKGPNFIDPLVRLLEHLHAKK--IFKTEDLKTGCLLYAALLEDIGIDLPLAPALFG 414
Query: 728 RLLARFVVESILSLQEV 744
++AR + LS + V
Sbjct: 415 EVVARLSLSCGLSFEVV 431
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,329,620
Number of extensions: 1152967
Number of successful extensions: 3320
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3319
Number of HSP's successfully gapped: 6
Length of query: 814
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 705
Effective length of database: 11,344,475
Effective search space: 7997854875
Effective search space used: 7997854875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)