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Os04g0499300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Initiation factor eIF-4 gamma, middle domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0168) R2 : 0.0115
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0817 (0.0354) R2dN8 : 0.0149 R2N8 : 0.0115
σ : 0.317
deviance : 46.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.64 0.26 12.6 0.449 0.265 -0.442 0.563 -0.411 -0.028 19.6 45.03 8 -- --
31.01 0.259 12.6 0.461 0.256 -0.394 0.431 -- -0.0263 18.9 44.36 7 -- --
31.37 0.261 12.6 0.449 0.248 -0.426 -- -0.2 -0.031 19.4 45.04 7 -- --
31.44 0.261 12.6 0.448 0.266 -0.431 -- -- -0.0272 19.5 43.53 7 -- --
34.4 0.273 12.6 0.44 -- -0.381 -- -0.365 -0.0493 -- 45.81 156 -- --
34.33 0.275 12.6 0.458 0.327 -- 0.374 -- -0.0252 15.6 -- -- -- --
34.75 0.276 12.6 0.464 0.328 -- -- -- -0.0231 15.4 -- -- -- --
34.73 0.274 12.6 0.446 -- -0.369 -- -- -0.0493 -- 41.99 156 -- --
36.79 0.282 12.6 -- 0.27 -0.45 -- -- -0.0767 19.9 42.5 7 -- --
40.78 0.298 12.6 0.45 -- -- -- -- -0.0318 -- -- -- -- --
40.43 0.297 12.6 -- 0.319 -- -- -- -0.0748 15.4 -- -- -- --
39.94 0.294 12.6 -- -- -0.354 -- -- -0.0972 -- 37 167 -- --
46.13 0.317 12.6 -- -- -- -- -- -0.0817 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.44 radiation 30.0 270 < th dose dependent rect. 23 11
6 29.59 temperature 20.0 270 > th dose independent rect. 10 9
9 29.69 atmosphere 1015.0 1440 < th dose independent rect. 3 6
10 29.69 temperature 10.0 270 > th dose dependent rect. 10 9
13 29.74 radiation 10.0 270 < th dose independent rect. 23 9
15 29.75 radiation 40.0 10 < th dose dependent rect. 3 16
16 29.76 radiation 40.0 30 < th dose independent rect. 3 16
20 29.82 wind 5.0 270 < th dose independent rect. 23 8
22 29.82 radiation 1.0 270 < th dose dependent rect. 5 20
24 29.84 temperature 15.0 270 > th dose independent rect. 14 15
36 29.90 radiation 20.0 90 < th dose independent rect. 1 10
38 29.91 temperature 10.0 43200 > th dose independent rect. 9 7
39 29.91 radiation 10.0 10 < th dose independent rect. 3 16
44 29.94 atmosphere 1010.0 270 < th dose independent rect. 10 9
52 29.99 humidity 90.0 270 < th dose independent rect. 10 9
83 30.11 temperature 15.0 270 > th dose independent rect. 1 17
86 30.12 radiation 40.0 10 < th dose dependent sin 4 NA
87 30.12 humidity 50.0 270 > th dose dependent rect. 18 7
89 30.13 temperature 15.0 90 > th dose independent rect. 3 16
90 30.13 radiation 10.0 10 < th dose independent rect. 3 18
93 30.14 temperature 15.0 270 > th dose independent rect. 23 20
101 30.16 precipitation 0.1 270 < th dose independent rect. 14 15
107 30.16 precipitation 0.1 270 < th dose dependent rect. 14 15
108 30.16 radiation 1.0 270 < th dose dependent rect. 8 17
114 30.19 temperature 15.0 1440 > th dose independent rect. 9 7
116 30.19 radiation 30.0 270 < th dose dependent sin 8 NA
121 30.19 radiation 40.0 10 < th dose dependent rect. 23 23
122 30.20 temperature 15.0 1440 > th dose independent rect. 22 5
125 30.20 radiation 1.0 270 > th dose dependent sin 9 NA
134 30.22 radiation 1.0 270 < th dose independent rect. 8 17
135 30.22 temperature 15.0 270 > th dose independent rect. 23 22
140 30.23 radiation 40.0 90 < th dose dependent sin 5 NA
150 30.25 radiation 1.0 270 > th dose dependent rect. 6 4
163 30.25 temperature 10.0 270 > th dose dependent rect. 10 21
164 30.26 precipitation 0.1 270 < th dose independent rect. 10 9
168 30.26 precipitation 0.1 270 < th dose dependent rect. 10 9
176 30.27 temperature 10.0 270 > th dose dependent rect. 13 16
178 30.28 radiation 1.0 270 < th dose independent rect. 5 20
208 30.34 radiation 1.0 270 > th dose independent sin 17 NA
209 30.34 temperature 15.0 270 > th dose independent rect. 23 8
235 30.37 humidity 50.0 43200 > th dose independent rect. 22 6
238 30.37 radiation 1.0 1440 < th dose dependent rect. 7 8
239 30.37 radiation 1.0 270 < th dose dependent rect. 17 8
242 30.38 radiation 1.0 1440 < th dose independent rect. 8 4
243 30.38 temperature 15.0 1440 > th dose independent rect. 20 7
249 30.38 radiation 1.0 1440 < th dose dependent rect. 8 4
256 30.39 humidity 50.0 270 > th dose independent rect. 19 15
258 30.39 radiation 1.0 90 > th dose dependent sin 5 NA
273 30.41 temperature 10.0 270 > th dose independent rect. 19 15
275 30.41 atmosphere 995.0 270 > th dose independent rect. 19 15
283 30.41 temperature 10.0 270 > th dose dependent rect. 1 18
307 30.44 radiation 1.0 270 < th dose independent rect. 17 8
308 30.44 temperature 10.0 270 > th dose independent rect. 5 9
309 30.44 atmosphere 995.0 270 > th dose independent rect. 5 9
310 30.44 atmosphere 1015.0 270 < th dose independent rect. 5 9
320 30.44 temperature 10.0 90 > th dose dependent rect. 15 17
323 30.45 precipitation 0.1 270 < th dose independent rect. 23 8
325 30.45 wind 9.0 270 < th dose independent rect. 19 15
330 30.45 precipitation 0.1 270 < th dose dependent rect. 23 8
345 30.46 humidity 80.0 1440 > th dose dependent rect. 11 2
350 30.46 wind 9.0 30 < th dose dependent rect. 3 16
354 30.47 radiation 1.0 1440 < th dose independent rect. 7 8
355 30.47 precipitation 0.1 270 < th dose independent rect. 5 9
361 30.47 precipitation 0.1 270 < th dose dependent rect. 5 9
365 30.47 temperature 10.0 270 > th dose dependent rect. 23 22
366 30.48 wind 9.0 270 < th dose independent rect. 5 9
385 30.49 radiation 1.0 1440 > th dose independent rect. 7 8
397 30.49 radiation 40.0 270 < th dose dependent rect. 23 19
398 30.50 radiation 20.0 30 < th dose independent rect. 3 7
418 30.51 precipitation 0.1 270 < th dose independent rect. 1 17
426 30.51 precipitation 0.1 270 < th dose dependent rect. 1 17
451 30.53 atmosphere 1015.0 270 < th dose independent rect. 23 8
460 30.53 temperature 15.0 270 > th dose independent rect. 10 21
468 30.54 radiation 1.0 1440 > th dose independent rect. 8 2
472 30.54 wind 9.0 270 < th dose independent rect. 7 16
476 30.54 precipitation 0.1 90 < th dose independent rect. 3 16
483 30.54 radiation 1.0 270 < th dose dependent sin 18 NA
488 30.54 precipitation 0.1 90 < th dose dependent rect. 3 16
495 30.55 radiation 10.0 10 < th dose independent sin 1 NA
528 30.56 humidity 50.0 270 > th dose independent rect. 6 17
543 30.57 humidity 70.0 270 > th dose independent rect. 23 8
549 30.57 radiation 1.0 10 > th dose dependent sin 4 NA
557 30.58 radiation 1.0 1440 > th dose independent rect. 8 5
559 30.58 wind 1.0 270 > th dose independent rect. 23 8
561 30.58 temperature 30.0 270 < th dose independent rect. 23 8
562 30.58 humidity 50.0 270 > th dose independent rect. 23 8
564 30.58 atmosphere 995.0 270 > th dose independent rect. 23 8
571 30.58 temperature 10.0 270 > th dose independent rect. 7 16
611 30.60 humidity 80.0 270 > th dose independent rect. 18 6
613 30.60 radiation 40.0 270 < th dose independent rect. 11 7
614 30.60 wind 9.0 270 < th dose independent rect. 10 9
644 30.62 wind 9.0 270 < th dose independent rect. 14 15
671 30.63 radiation 40.0 270 < th dose independent rect. 13 16
673 30.63 radiation 20.0 90 < th dose independent rect. 23 22
704 30.64 temperature 10.0 10 > th dose dependent rect. 15 17
709 30.65 precipitation 0.1 90 < th dose independent rect. 1 7
710 30.65 humidity 50.0 270 > th dose independent rect. 5 8
712 30.65 wind 7.0 30 < th dose independent rect. 3 16
719 30.65 precipitation 0.1 90 < th dose dependent rect. 1 7
728 30.66 radiation 20.0 90 < th dose independent sin 6 NA
750 30.67 radiation 1.0 1440 > th dose independent rect. 10 2
752 30.67 humidity 60.0 270 > th dose independent rect. 18 7
766 30.67 radiation 40.0 10 < th dose dependent rect. 3 11
772 30.68 wind 7.0 30 < th dose independent rect. 19 8
784 30.68 temperature 15.0 270 > th dose independent rect. 4 23
792 30.69 humidity 70.0 90 > th dose independent rect. 1 7
794 30.69 wind 1.0 270 > th dose independent rect. 10 9
811 30.70 radiation 10.0 270 < th dose independent sin 8 NA
815 30.70 temperature 30.0 270 < th dose independent rect. 18 7
847 30.70 radiation 1.0 1440 < th dose dependent rect. 7 22
868 30.71 precipitation 0.1 270 < th dose independent rect. 23 20
870 30.71 wind 9.0 90 < th dose dependent rect. 1 7
879 30.71 precipitation 0.1 270 < th dose dependent rect. 23 20
909 30.73 wind 1.0 270 > th dose independent rect. 7 16
916 30.73 wind 9.0 270 < th dose dependent rect. 23 7
924 30.73 radiation 1.0 1440 < th dose dependent rect. 7 12
928 30.73 radiation 1.0 1440 < th dose dependent rect. 7 17
935 30.74 temperature 15.0 4320 > th dose independent rect. 9 2
936 30.74 wind 5.0 10 < th dose independent rect. 3 5
940 30.74 temperature 10.0 90 > th dose independent rect. 1 7
942 30.74 temperature 30.0 90 < th dose independent rect. 1 7
943 30.74 humidity 50.0 90 > th dose independent rect. 1 7
945 30.74 atmosphere 995.0 90 > th dose independent rect. 1 7
946 30.74 atmosphere 1015.0 90 < th dose independent rect. 1 7
950 30.74 precipitation 0.1 270 < th dose independent rect. 19 15
963 30.74 precipitation 0.1 270 < th dose dependent rect. 19 15
972 30.75 temperature 10.0 270 > th dose independent rect. 18 7
981 30.75 atmosphere 995.0 270 > th dose independent rect. 11 8
982 30.75 atmosphere 995.0 90 > th dose independent rect. 19 8
988 30.75 precipitation 0.1 30 < th dose independent rect. 19 8
990 30.75 atmosphere 1015.0 90 < th dose independent rect. 3 16
992 30.75 atmosphere 1015.0 270 < th dose independent rect. 1 17