BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0499300 Os04g0499300|003-103-E06
(480 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57870.1 | chr5:23439755-23443433 FORWARD LENGTH=781 407 e-114
AT2G24050.1 | chr2:10225500-10228456 REVERSE LENGTH=748 229 3e-60
AT4G30680.1 | chr4:14958687-14960012 REVERSE LENGTH=264 165 4e-41
AT3G60240.4 | chr3:22261842-22268295 FORWARD LENGTH=1728 107 2e-23
AT1G62410.1 | chr1:23092915-23093869 FORWARD LENGTH=224 82 4e-16
AT5G63190.1 | chr5:25346145-25348563 FORWARD LENGTH=703 56 4e-08
AT3G48390.1 | chr3:17921274-17923270 FORWARD LENGTH=634 50 4e-06
AT4G24800.1 | chr4:12782463-12784902 FORWARD LENGTH=703 48 1e-05
>AT5G57870.1 | chr5:23439755-23443433 FORWARD LENGTH=781
Length = 780
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 235/480 (48%), Positives = 307/480 (63%), Gaps = 31/480 (6%)
Query: 2 ERRDKERIVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEAI 61
ER DKE+++KL+TLGNIRLIGELLKQKMVPEKIVHHIVQELLG+ D+K CP EENVEAI
Sbjct: 329 ERNDKEKLLKLKTLGNIRLIGELLKQKMVPEKIVHHIVQELLGA--DEKVCPAEENVEAI 386
Query: 62 CQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPRR 121
C FF TIGKQLD N KS+RIND YF +++ L+ N QL RLRFMV++++D+RSN WVPRR
Sbjct: 387 CHFFKTIGKQLDGNVKSKRINDVYFKRLQALSKNPQLELRLRFMVQNIIDMRSNGWVPRR 446
Query: 122 EEVNKITLIKAKTISEIHDEAMKTLGLRPGATGLTRNGRNAPGGPLSPGG-FPMNRXXXX 180
EE +KA+TI+EIH EA K LGLRPGAT R G + GGP+SPG +P R
Sbjct: 447 EE------MKARTITEIHTEAEKNLGLRPGATANMRRGMVSSGGPVSPGPVYPGGR---- 496
Query: 181 XXXXXXXXXXXXXXSRKMPGMPGLDNDNWEVPRSKSMPRGDSLRNQGPLLXXXXXXXXXX 240
+R+MPGMPG+DNDNWEVPR++SM R D GP
Sbjct: 497 --PGAGGLMPGMPGTRRMPGMPGVDNDNWEVPRTRSMSRRD-----GPGPLHSPAVSKSA 549
Query: 241 XXXXRLLPHG-SGALIGKXXXXXXXXXXXXXXXXMASLTHTPAQTXXXXXXXXXXXXXXX 299
RLLP G SG + GK +++ PAQ+
Sbjct: 550 SMNTRLLPQGSSGIMSGKTSALLQGSGSVSRPVTVSA--ERPAQS-------VAPLTVPV 600
Query: 300 XTDKAAGSSHEMPAAV-QKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAINL 358
+K S ++ V Q+KT SLLEEYF +R+L EA QC+EEL P Y+ E VKEAI+L
Sbjct: 601 PVEKPQPSGPKLSEEVLQRKTKSLLEEYFNVRLLGEALQCVEELGLPSYHPEFVKEAISL 660
Query: 359 ALDKGPNFIDPLVRLLEHLHAKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVVA 418
+L+K P ++P+ LLE+L +KK+ +DL+TG LLY A+L+DIGIDLP AP FGE+V
Sbjct: 661 SLEKSPPVVEPIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGIDLPKAPNNFGEIVG 720
Query: 419 RLSLSCGLSFEVVEEILKAVEDTYFRKGIFDAVMKTMGGNSSGQAILSSHAVVIDACNKL 478
+L L+ G+ F++V EI+ +ED F+K + DA ++ + + G+++L+S A I+AC L
Sbjct: 721 KLILAGGVDFKLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGKSLLASQAADIEACRNL 780
>AT2G24050.1 | chr2:10225500-10228456 REVERSE LENGTH=748
Length = 747
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/259 (52%), Positives = 158/259 (61%), Gaps = 33/259 (12%)
Query: 1 MERRDKERIVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEA 60
MER DKE++ KLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLG D KACP E +VEA
Sbjct: 287 MERMDKEKMAKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGD--DTKACPAEGDVEA 344
Query: 61 ICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPR 120
+CQFF TIGKQLD++P+SR INDTYF ++KEL + QL RLRFMV++VVDLR+N WVPR
Sbjct: 345 LCQFFITIGKQLDDSPRSRGINDTYFGRLKELARHPQLELRLRFMVQNVVDLRANKWVPR 404
Query: 121 REEVNKITLIKAKTISEIHDEAMKTLGLRPGATG----LTRNGRNAPGGPLSPG-GFPMN 175
REEV KAK I+EIH EA + LG+RPGA N G G G +
Sbjct: 405 REEV------KAKKINEIHSEAERNLGMRPGAMASMRNNNNNRAAVSGAADGMGLGNILG 458
Query: 176 RXXXXXXXXXXXXXXXXXXSRKMPGMPG-----LDNDNWEVPRSKSMPRGDSLRNQGPLL 230
R MPGMPG +D D WE+ R++SMPRG+ Q P
Sbjct: 459 RPGTGGM---------------MPGMPGTRVMPMDEDGWEMARTRSMPRGNRQTVQQPRF 503
Query: 231 XXXXXXXXXXXXXXRLLPH 249
RLLP
Sbjct: 504 QPPPAINKSLSVNSRLLPQ 522
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 121/165 (73%)
Query: 315 VQKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAINLALDKGPNFIDPLVRLL 374
+++KT SLLEEYF IR++DEA QC+EEL+ P Y+ E+VKE I+L L+K P ++P+ +LL
Sbjct: 583 LERKTKSLLEEYFSIRLVDEALQCVEELKSPSYHPELVKETISLGLEKNPPLVEPIAKLL 642
Query: 375 EHLHAKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVVARLSLSCGLSFEVVEEI 434
+HL +K + ++DL GCLLY ++L+DIGIDLP AP FGE + L + L FE+V ++
Sbjct: 643 KHLISKNVLTSKDLGAGCLLYGSMLDDIGIDLPKAPNSFGEFLGELVSAKVLDFELVRDV 702
Query: 435 LKAVEDTYFRKGIFDAVMKTMGGNSSGQAILSSHAVVIDACNKLL 479
LK +ED +FRK + +AV+K++ SGQ++L S AV ++AC LL
Sbjct: 703 LKKMEDEWFRKTVLNAVIKSVRECPSGQSVLDSQAVEVEACQSLL 747
>AT4G30680.1 | chr4:14958687-14960012 REVERSE LENGTH=264
Length = 263
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 119/165 (72%), Gaps = 5/165 (3%)
Query: 315 VQKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAINLALDKGPNFIDPLVRLL 374
+ +KT SLLEEYF +R+LDEA QCIEEL+ P Y+ E+VKEAI+L L+K P ++P+ +LL
Sbjct: 104 LSRKTNSLLEEYFNVRLLDEALQCIEELKTPSYHPELVKEAISLGLEKNPPCVEPVAKLL 163
Query: 375 EHLHAKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVVARLSLSCGLSFEVVEEI 434
EHL +K + +DL+ GCLLY ++L+DIGIDLP AP FGE++ L ++ E+V+EI
Sbjct: 164 EHLVSKNVLTPKDLRNGCLLYGSMLDDIGIDLPKAPNNFGEILGSLVMAKASDSELVKEI 223
Query: 435 LKAVEDTYFRKGIFDAVMKTMGGNSSGQAILSSHAVVIDACNKLL 479
L + D +F+K + +AVM+++ +++L++ AV ++AC L+
Sbjct: 224 LMKMGDEWFKKAVLEAVMRSV-----SESLLTTEAVEVEACRGLV 263
>AT3G60240.4 | chr3:22261842-22268295 FORWARD LENGTH=1728
Length = 1727
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 85/135 (62%), Gaps = 11/135 (8%)
Query: 10 VKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEAICQFFNTIG 69
V+ R LGNIRLIGEL K++M+ EKI+H +Q+LLG D P EEN+EA+C+ +TIG
Sbjct: 1218 VRRRMLGNIRLIGELYKKRMLTEKIMHACIQKLLGYNQD----PHEENIEALCKLMSTIG 1273
Query: 70 KQLDENPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPRREEVNKITL 129
+D N K++ D YF +MK L+ +L+ R+RFM+ + +DLR N W R + +
Sbjct: 1274 VMIDHN-KAKFQMDGYFEKMKMLSCKQELSSRVRFMLINAIDLRKNKWQER------MKV 1326
Query: 130 IKAKTISEIHDEAMK 144
K I E+H +A +
Sbjct: 1327 EGPKKIEEVHRDAAQ 1341
>AT1G62410.1 | chr1:23092915-23093869 FORWARD LENGTH=224
Length = 223
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 4/113 (3%)
Query: 2 ERRDKERIVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEAI 61
ER D+ R++ LRTLGN+R GEL ++M+ EK+V I Q+LL ++ CP EE + AI
Sbjct: 90 EREDEVRLLNLRTLGNLRFCGELFLKRMLTEKVVLAIGQKLLEDA--EQMCPSEEKIIAI 147
Query: 62 CQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRS 114
C F NT+GK+LD + S+ +N+ ++K L+ + QL LR MV ++ L S
Sbjct: 148 CLFLNTVGKKLD-SLNSKLMNEI-LRRLKNLSNHPQLVMSLRLMVGKIIHLHS 198
>AT5G63190.1 | chr5:25346145-25348563 FORWARD LENGTH=703
Length = 702
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 303 KAAGSSHEMPAAVQKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAINLALDK 362
K GS+H +KK +L+EY EA +CI EL ++ E+VK A+ LA+D
Sbjct: 275 KWGGSTHTTVEETKKKISEILKEYVENGDTYEACRCIRELGVSFFHHEVVKRALVLAMD- 333
Query: 363 GPNFIDPLVRLLEHLHAKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVVARLSL 422
P +++LL+ + + + + G A L+D+ +D+P A LF +V + ++
Sbjct: 334 SPTAESLVLKLLKETAEEGLISSSQMVKGFFRVAESLDDLALDIPSAKKLFDSIVPK-AI 392
Query: 423 SCGL---SFEVVEE 433
S G SF++ +
Sbjct: 393 SGGWLDDSFKITSD 406
>AT3G48390.1 | chr3:17921274-17923270 FORWARD LENGTH=634
Length = 633
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 316 QKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAINLALDKGPNFIDPLVRLLE 375
+ K LLEEY ++ EA +CI +L P + E+VK+A+ +A++K D ++ LL+
Sbjct: 516 KDKIWKLLEEYEVGGVISEACRCIRDLGMPFFNHEVVKKALVMAMEKKN---DRMLNLLQ 572
Query: 376 HLHAKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVVAR 419
A+ I T + G L+D+ +D+P A F VA
Sbjct: 573 ECFAEGIITTNQMTKGFGRVKDSLDDLSLDIPNAEEKFNSYVAH 616
>AT4G24800.1 | chr4:12782463-12784902 FORWARD LENGTH=703
Length = 702
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 316 QKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAINLALDKGPNFIDPLVRLLE 375
+ K +LLEEY ++ EA +CI EL P + E+VK+A+ + ++K + + ++ LL+
Sbjct: 579 KDKISNLLEEYESSGLVSEACKCIHELGMPFFNHEVVKKALVMGMEKKKDKM--MLDLLQ 636
Query: 376 HLHAKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVV 417
++ + T + G LED+ +D+P A F + V
Sbjct: 637 ESFSEGLITTNQMTKGFTRVKDGLEDLALDIPNAKEKFNDYV 678
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,020,415
Number of extensions: 352557
Number of successful extensions: 910
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 892
Number of HSP's successfully gapped: 13
Length of query: 480
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 378
Effective length of database: 8,310,137
Effective search space: 3141231786
Effective search space used: 3141231786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)