BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0499300 Os04g0499300|003-103-E06
(480 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0499300 Initiation factor eIF-4 gamma, middle domain c... 830 0.0
Os02g0611500 Similar to Eukaryotic initiation factor-like p... 507 e-144
Os07g0555200 Similar to Eukaryotic translation initiation f... 113 3e-25
>Os04g0499300 Initiation factor eIF-4 gamma, middle domain containing protein
Length = 480
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/480 (86%), Positives = 416/480 (86%)
Query: 1 MERRDKERIVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEA 60
MERRDKERIVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEA
Sbjct: 1 MERRDKERIVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEA 60
Query: 61 ICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPR 120
ICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPR
Sbjct: 61 ICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPR 120
Query: 121 REEVNKITLIKAKTISEIHDEAMKTLGLRPGATGLTRNGRNAPGGPLSPGGFPMNRXXXX 180
REEVNKITLIKAKTISEIHDEAMKTLGLRPGATGLTRNGRNAPGGPLSPGGFPMNR
Sbjct: 121 REEVNKITLIKAKTISEIHDEAMKTLGLRPGATGLTRNGRNAPGGPLSPGGFPMNRPGTG 180
Query: 181 XXXXXXXXXXXXXXSRKMPGMPGLDNDNWEVPRSKSMPRGDSLRNQGPLLXXXXXXXXXX 240
SRKMPGMPGLDNDNWEVPRSKSMPRGDSLRNQGPLL
Sbjct: 181 GMMPGMPGTPGMPGSRKMPGMPGLDNDNWEVPRSKSMPRGDSLRNQGPLLNKPSSINKPS 240
Query: 241 XXXXRLLPHGSGALIGKXXXXXXXXXXXXXXXXMASLTHTPAQTXXXXXXXXXXXXXXXX 300
RLLPHGSGALIGK MASLTHTPAQT
Sbjct: 241 SINSRLLPHGSGALIGKSALLGSGGPPSRPSSLMASLTHTPAQTAPSPKPVSAAPAVVPV 300
Query: 301 TDKAAGSSHEMPAAVQKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAINLAL 360
TDKAAGSSHEMPAAVQKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAINLAL
Sbjct: 301 TDKAAGSSHEMPAAVQKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAINLAL 360
Query: 361 DKGPNFIDPLVRLLEHLHAKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVVARL 420
DKGPNFIDPLVRLLEHLHAKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVVARL
Sbjct: 361 DKGPNFIDPLVRLLEHLHAKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVVARL 420
Query: 421 SLSCGLSFEVVEEILKAVEDTYFRKGIFDAVMKTMGGNSSGQAILSSHAVVIDACNKLLK 480
SLSCGLSFEVVEEILKAVEDTYFRKGIFDAVMKTMGGNSSGQAILSSHAVVIDACNKLLK
Sbjct: 421 SLSCGLSFEVVEEILKAVEDTYFRKGIFDAVMKTMGGNSSGQAILSSHAVVIDACNKLLK 480
>Os02g0611500 Similar to Eukaryotic initiation factor-like protein
Length = 780
Score = 507 bits (1306), Expect = e-144, Method: Compositional matrix adjust.
Identities = 279/482 (57%), Positives = 324/482 (67%), Gaps = 27/482 (5%)
Query: 1 MERRDKERIVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEA 60
MERRDKER+VKLRTLGNIRL+GELLKQKMVPEKIVHHIVQELLGS ++ CP EENVEA
Sbjct: 320 MERRDKERLVKLRTLGNIRLVGELLKQKMVPEKIVHHIVQELLGSESNR--CPAEENVEA 377
Query: 61 ICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPR 120
ICQFFNTIGKQLDENPKSRR ND YF ++K+LTTN QLA RLRFM RDV+DLRSN WVPR
Sbjct: 378 ICQFFNTIGKQLDENPKSRRFNDVYFNRLKDLTTNSQLASRLRFMARDVLDLRSNQWVPR 437
Query: 121 REEVNKITLIKAKTISEIHDEAMKTLGLRPGATG--LTRNGRNAPGGPLSPGGFPMNRXX 178
REE +KAK ISEIH EA LGLRPG+T T GGPLSPG F MN+
Sbjct: 438 REE------MKAKKISEIHREAENNLGLRPGSTASIRTGRTGTGGGGPLSPGAFSMNQPG 491
Query: 179 XXXXXXXXXXXXXXXXSRKMPGMPGLDNDNWEVPRSKSMPRGDSLRNQGPLLXXXXXXXX 238
+RKMPGMPGL +D+WEVP S+S PR D +RN P L
Sbjct: 492 IVGMLPGMPG------ARKMPGMPGLGSDDWEVPHSRSKPRADPVRNLTPSLANKPSPNN 545
Query: 239 XXXXXXRLLPHGSGALI-GKXXXXXXXXXXXXXXXXMASLTHTPAQTXXXXXXXXXXXXX 297
RLLP GS ALI GK L TP+QT
Sbjct: 546 S-----RLLPQGSAALISGKTSALVGSGGPLSH-----GLVVTPSQTTGPPKSLIPAPSV 595
Query: 298 XXXTDKAAGSSHEMPAAVQKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAIN 357
++ A + +QKKT+SLL+EYF I +L EAQQCIEEL+ P+YY E+VKEAIN
Sbjct: 596 DPIVEQPAAAPKPSSTELQKKTISLLKEYFHILLLHEAQQCIEELKSPDYYPEVVKEAIN 655
Query: 358 LALDKGPNFIDPLVRLLEHLHAKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVV 417
LALDKG N IDPL+RLLEHL+ K +FK DL+TGCLLY++LL+++ IDLP AP FGEV+
Sbjct: 656 LALDKGTNSIDPLLRLLEHLYNKNVFKATDLETGCLLYSSLLDELAIDLPKAPVHFGEVI 715
Query: 418 ARLSLSCGLSFEVVEEILKAVEDTYFRKGIFDAVMKTMGGNSSGQAILSSHAVVIDACNK 477
RL LS LS EVVE+ LK +ED++FR +F+A+MK M N SGQAIL SH IDAC+K
Sbjct: 716 GRLVLSHCLSIEVVEDTLKKIEDSFFRAAVFEAMMKIMKANPSGQAILGSHVAKIDACSK 775
Query: 478 LL 479
LL
Sbjct: 776 LL 777
>Os07g0555200 Similar to Eukaryotic translation initiation factor 4G
Length = 814
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 97/144 (67%), Gaps = 12/144 (8%)
Query: 2 ERRDKERI-VKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEA 60
E R+++RI + R LGNIRLIGEL K++M+ E+I+H +++LLG+ + P+EEN+EA
Sbjct: 318 EEREEKRIRARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGNYQN----PDEENIEA 373
Query: 61 ICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPR 120
+C+ +TIG+ +D + K++ D YF M +L+T+ QL+ R+RFM+RD +DLR N W R
Sbjct: 374 LCKLMSTIGEMID-HAKAKEHMDAYFDIMLKLSTSQQLSSRVRFMLRDSIDLRKNKWQQR 432
Query: 121 REEVNKITLIKAKTISEIHDEAMK 144
R+ + K I E+H +A +
Sbjct: 433 RK------VEGPKKIDEVHRDAAQ 450
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,154,009
Number of extensions: 532564
Number of successful extensions: 1249
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1240
Number of HSP's successfully gapped: 3
Length of query: 480
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 375
Effective length of database: 11,553,331
Effective search space: 4332499125
Effective search space used: 4332499125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)