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Os07g0555200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Eukaryotic translation initiation factor 4G.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0145) R2 : 0.27
β1 : 0.686 (0.0532) R2dD : 0.277 R2D : 0.266
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0377 (0.031) R2dN8 : 0.00318 R2N8 : -0.00748
σ : 0.272
deviance : 34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.86 0.215 11.6 1.37 0.253 -0.558 0.0532 2.08 0.279 12.7 16.23 1758 -- --
24.53 0.231 11.7 0.979 0.243 -0.516 -0.0567 -- 0.137 12.5 14.37 4788 -- --
20.86 0.213 11.6 1.36 0.257 -0.55 -- 2.05 0.277 12.6 16.42 1713 -- --
24.37 0.23 11.7 0.956 0.238 -0.564 -- -- 0.155 12.4 11.65 4804 -- --
23.23 0.224 11.6 1.32 -- -0.634 -- 1.85 0.274 -- 17.83 1046 -- --
29.85 0.256 11.7 0.692 0.257 -- 0.0639 -- 0.0415 12.3 -- -- -- --
29.86 0.256 11.7 0.695 0.257 -- -- -- 0.0418 12.3 -- -- -- --
26.01 0.238 11.7 0.883 -- -0.702 -- -- 0.154 -- 14.24 957 -- --
41.79 0.301 11.7 -- 0.214 -0.165 -- -- -0.00644 12.2 20.31 1075 -- --
34 0.272 11.7 0.686 -- -- -- -- 0.0377 -- -- -- -- --
42.59 0.305 11.7 -- 0.247 -- -- -- -0.0356 12.2 -- -- -- --
44.22 0.31 11.7 -- -- -0.275 -- -- 0.00579 -- 20.3 913 -- --
46.43 0.318 11.7 -- -- -- -- -- -0.0384 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.76 humidity 90 14400 > th dose dependent rect. 23 2
2 19.78 humidity 90 14400 > th dose dependent rect. 21 6
3 19.83 humidity 90 14400 > th dose dependent rect. 22 4
4 19.86 humidity 90 14400 > th dose dependent rect. 16 13
9 19.91 humidity 90 14400 > th dose dependent rect. 19 9
15 19.96 humidity 90 14400 > th dose dependent sin 11 NA
22 19.97 humidity 90 14400 > th dose dependent rect. 21 11
30 20.00 radiation 1 14400 > th dose independent rect. 18 1
41 20.01 wind 9 43200 < th dose independent rect. 5 1
77 20.10 radiation 1 14400 < th dose independent rect. 18 11
85 20.12 radiation 1 14400 < th dose dependent rect. 18 14
93 20.15 radiation 1 14400 < th dose dependent rect. 4 3
110 20.17 radiation 1 43200 > th dose independent rect. 10 4
114 20.18 radiation 1 43200 < th dose independent rect. 10 4
115 20.18 radiation 1 43200 < th dose dependent rect. 10 4
133 20.20 radiation 1 43200 < th dose independent rect. 11 2
135 20.20 radiation 1 14400 < th dose independent rect. 18 8
137 20.20 radiation 1 14400 < th dose independent rect. 18 13
138 20.20 radiation 1 43200 < th dose dependent rect. 11 2
142 20.21 wind 7 43200 > th dose independent rect. 5 1
143 20.21 radiation 1 43200 > th dose independent rect. 11 2
149 20.21 wind 7 43200 > th dose dependent rect. 5 1
158 20.23 radiation 1 14400 < th dose independent rect. 18 1
172 20.25 radiation 1 43200 < th dose dependent rect. 7 8
180 20.26 radiation 1 14400 < th dose dependent sin 10 NA
190 20.27 radiation 1 43200 > th dose independent rect. 8 7
191 20.27 radiation 1 14400 < th dose dependent rect. 6 1
198 20.28 humidity 90 14400 > th dose independent rect. 23 1
257 20.32 humidity 90 43200 > th dose dependent rect. 10 5
295 20.35 atmosphere 1005 43200 < th dose independent rect. 11 1
301 20.35 humidity 90 14400 > th dose dependent rect. 2 7
309 20.37 atmosphere 1005 43200 > th dose independent rect. 11 1
333 20.39 humidity 90 43200 > th dose independent rect. 11 1
334 20.39 radiation 1 43200 < th dose independent rect. 8 1
339 20.40 radiation 1 43200 > th dose independent rect. 8 1
351 20.41 humidity 90 14400 > th dose dependent rect. 5 1
357 20.42 humidity 90 43200 > th dose independent rect. 11 3
368 20.43 humidity 90 14400 < th dose independent rect. 23 2
375 20.44 atmosphere 1005 43200 > th dose independent rect. 1 1
398 20.45 humidity 90 43200 < th dose independent rect. 12 1
399 20.45 atmosphere 1005 43200 < th dose independent rect. 1 1
403 20.45 humidity 90 14400 > th dose independent rect. 22 5
406 20.45 humidity 90 14400 > th dose dependent rect. 4 3
414 20.46 humidity 90 43200 > th dose independent rect. 10 5
415 20.46 humidity 90 14400 > th dose independent rect. 20 8
470 20.49 radiation 1 14400 > th dose independent rect. 18 14
471 20.49 humidity 90 14400 > th dose dependent rect. 3 5
473 20.49 radiation 1 43200 > th dose dependent rect. 18 11
478 20.50 radiation 1 43200 > th dose independent rect. 14 1
479 20.50 radiation 1 43200 < th dose independent rect. 14 1
487 20.50 radiation 1 43200 < th dose dependent rect. 14 1
498 20.51 humidity 90 14400 > th dose independent rect. 22 3
500 20.51 atmosphere 1005 43200 < th dose independent rect. 10 3
513 20.52 humidity 80 43200 > th dose independent rect. 17 1
573 20.54 temperature 15 43200 < th dose independent rect. 6 1
585 20.55 temperature 15 43200 > th dose independent rect. 22 1
597 20.56 radiation 10 43200 < th dose independent rect. 5 1
604 20.56 radiation 1 14400 < th dose dependent rect. 17 2
622 20.57 temperature 15 43200 < th dose independent rect. 22 1
632 20.57 atmosphere 1005 43200 < th dose independent rect. 8 18
639 20.57 radiation 1 14400 < th dose dependent rect. 4 15
652 20.57 radiation 1 14400 < th dose dependent rect. 4 21
653 20.57 radiation 1 14400 < th dose dependent rect. 10 22
656 20.58 wind 3 43200 > th dose independent rect. 13 1
668 20.58 radiation 10 43200 < th dose independent rect. 21 9
675 20.58 radiation 1 14400 < th dose dependent no NA NA
731 20.59 humidity 80 43200 < th dose independent rect. 17 1
751 20.59 radiation 1 14400 < th dose independent rect. 18 20
768 20.60 temperature 20 43200 > th dose independent rect. 7 1
775 20.60 atmosphere 1005 43200 < th dose independent rect. 8 15
779 20.60 atmosphere 1005 43200 > th dose independent rect. 8 18
789 20.60 temperature 20 1440 > th dose dependent rect. 17 5
815 20.61 temperature 15 43200 < th dose dependent rect. 5 1
849 20.62 atmosphere 1005 43200 < th dose independent rect. 22 19
856 20.62 temperature 15 43200 < th dose dependent rect. 2 1
857 20.62 radiation 1 43200 > th dose dependent rect. 18 1
870 20.63 atmosphere 1005 43200 < th dose independent sin 0 NA
911 20.63 atmosphere 995 43200 > th dose dependent rect. 23 1
928 20.64 atmosphere 1005 43200 < th dose independent sin 22 NA
931 20.64 atmosphere 1005 43200 < th dose independent no NA NA
949 20.64 radiation 30 43200 < th dose independent rect. 18 13
969 20.64 atmosphere 1005 43200 < th dose independent rect. 16 22
974 20.64 atmosphere 1005 43200 < th dose independent rect. 13 23
981 20.64 atmosphere 1005 43200 < th dose independent rect. 24 23