BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0546000 Os07g0546000|AK065871
(238 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0546000 Similar to Isopentenyl pyrophosphate:dimethyll... 462 e-130
Os05g0413400 Similar to Isopentenyl diphosphate isomerase 1 405 e-113
>Os07g0546000 Similar to Isopentenyl pyrophosphate:dimethyllallyl pyrophosphate
isomerase (EC 5.3.3.2) (Fragment)
Length = 238
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 17 QKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQR 76
QKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQR
Sbjct: 17 QKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQR 76
Query: 77 SATKVTFPLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPVDQFTP 136
SATKVTFPLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPVDQFTP
Sbjct: 77 SATKVTFPLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPVDQFTP 136
Query: 137 LGRMLYKAPSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELIRKADAGE 196
LGRMLYKAPSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELIRKADAGE
Sbjct: 137 LGRMLYKAPSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELIRKADAGE 196
Query: 197 EGLKLSPWFRLVVDNFLMGWWDHVEKGTLNEAVDMETIHKLK 238
EGLKLSPWFRLVVDNFLMGWWDHVEKGTLNEAVDMETIHKLK
Sbjct: 197 EGLKLSPWFRLVVDNFLMGWWDHVEKGTLNEAVDMETIHKLK 238
>Os05g0413400 Similar to Isopentenyl diphosphate isomerase 1
Length = 293
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 187/221 (84%), Positives = 210/221 (95%)
Query: 17 QKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQR 76
Q+RLMF+DECILVDEQDNV+GH+SKYNCHLMEKI S ++LHRAFSVFLFNSKYELLLQQR
Sbjct: 73 QQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYELLLQQR 132
Query: 77 SATKVTFPLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPVDQFTP 136
SATKVTFPLVWTNTCCSHPLYRESELI++ LGVRNAAQRKL DELGI AE++PVDQF P
Sbjct: 133 SATKVTFPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFDELGIQAEELPVDQFIP 192
Query: 137 LGRMLYKAPSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELIRKADAGE 196
LGRMLYKAPSDGKWGEHELDYLLF+VRDV++ PNP+EVADVKYV+R++LKEL++KADAGE
Sbjct: 193 LGRMLYKAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYVNRDELKELLKKADAGE 252
Query: 197 EGLKLSPWFRLVVDNFLMGWWDHVEKGTLNEAVDMETIHKL 237
G+KLSPWFRLVVDNFLM WWDHVE+GTL EA+DM+TIHKL
Sbjct: 253 GGIKLSPWFRLVVDNFLMRWWDHVEQGTLEEAIDMKTIHKL 293
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,445,669
Number of extensions: 306490
Number of successful extensions: 618
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)