Os07g0546000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase (EC 5.3.3.2) (Fragment).
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Os07g0546000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase (EC 5.3.3.2) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.55 | 0.383 | 14.1 | -1.15 | 3.29 | -1.4 | 0.402 | -1.73 | -0.464 | 7.6 | 1.17 | 1427 | -- | -- |
| 67.69 | 0.383 | 14.2 | -1.3 | 3.34 | -1.06 | 0.4 | -- | -0.5 | 7.68 | 2.269 | 1391 | -- | -- |
| 67 | 0.381 | 14.1 | -1.14 | 3.29 | -1.39 | -- | -1.69 | -0.463 | 7.58 | 1.17 | 1428 | -- | -- |
| 68.12 | 0.384 | 14.2 | -1.28 | 3.35 | -1.07 | -- | -- | -0.508 | 7.66 | 2.16 | 1393 | -- | -- |
| 537.09 | 1.09 | 14.2 | -1.05 | -- | -1.05 | -- | -0.108 | -0.323 | -- | 2.052 | 7306 | -- | -- |
| 82.34 | 0.425 | 14.1 | -1.08 | 3.28 | -- | 0.32 | -- | -0.351 | 7.53 | -- | -- | -- | -- |
| 82.62 | 0.426 | 14.1 | -1.08 | 3.28 | -- | -- | -- | -0.352 | 7.53 | -- | -- | -- | -- |
| 534.91 | 1.08 | 14.2 | -1.03 | -- | -1.07 | -- | -- | -0.336 | -- | 3.153 | 7297 | -- | -- |
| 106.5 | 0.481 | 14.1 | -- | 3.3 | -0.488 | -- | -- | -0.319 | 7.63 | 8.851 | 1402 | -- | -- |
| 657.44 | 1.2 | 14.2 | -1.03 | -- | -- | -- | -- | -0.301 | -- | -- | -- | -- | -- |
| 113.13 | 0.498 | 14.1 | -- | 3.27 | -- | -- | -- | -0.232 | 7.55 | -- | -- | -- | -- |
| 300.27 | 0.807 | 14.1 | -- | -- | 4.42 | -- | -- | 0.197 | -- | 1.996 | 2340 | -- | -- |
| 685.27 | 1.22 | 14.2 | -- | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.45 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 2 | 61.47 | temperature | 20.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 3 | 61.47 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 7 | 61.96 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 8 | 62.00 | temperature | 10.0 | 30 | > th | dose dependent | sin | 6 | NA |
| 10 | 62.07 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 34 | 62.95 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 37 | 63.05 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 39 | 63.08 | temperature | 30.0 | 30 | < th | dose dependent | sin | 6 | NA |
| 49 | 63.25 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 19 |
| 57 | 63.43 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 94 | 64.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 143 | 64.60 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 148 | 64.66 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 154 | 64.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 155 | 64.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 156 | 64.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 11 | 7 |
| 158 | 64.79 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 159 | 64.79 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 162 | 64.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 164 | 64.82 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 171 | 64.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 172 | 64.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 179 | 64.94 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 181 | 64.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 192 | 65.02 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 194 | 65.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 228 | 65.11 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 229 | 65.11 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 21 | NA |
| 245 | 65.15 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 264 | 65.21 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 269 | 65.23 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 277 | 65.27 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 281 | 65.27 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 13 |
| 283 | 65.28 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 301 | 65.31 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 322 | 65.39 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 345 | 65.45 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 367 | 65.52 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 378 | 65.55 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 21 |
| 431 | 65.66 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 447 | 65.73 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 453 | 65.75 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 469 | 65.79 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 484 | 65.84 | radiation | 10.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 486 | 65.84 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 489 | 65.84 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 21 |
| 492 | 65.84 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 8 |
| 531 | 65.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 534 | 65.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 544 | 65.92 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 560 | 65.95 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 577 | 65.95 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 15 |
| 597 | 65.98 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 607 | 65.99 | radiation | 40.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 620 | 66.03 | radiation | 40.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 686 | 66.14 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 15 | 16 |
| 748 | 66.24 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 876 | 66.35 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 898 | 66.37 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 950 | 66.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 959 | 66.46 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 20 | NA |
| 964 | 66.46 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 20 | NA |
| 967 | 66.47 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 20 | NA |