BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0546000 Os07g0546000|AK065871
         (238 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02780.1  | chr3:602578-604648 REVERSE LENGTH=285              420   e-118
AT5G16440.1  | chr5:5371765-5373575 FORWARD LENGTH=292            414   e-116
AT1G79690.1  | chr1:29985360-29990171 FORWARD LENGTH=773           48   5e-06

>AT3G02780.1 | chr3:602578-604648 REVERSE LENGTH=285
          Length = 284

 Score =  420 bits (1079), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/221 (89%), Positives = 212/221 (95%)

Query: 17  QKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQR 76
           Q+RLMF+DECILVDE D VVGH+SKYNCHLME IE++NLLHRAFSVFLFNSKYELLLQQR
Sbjct: 64  QRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQR 123

Query: 77  SATKVTFPLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPVDQFTP 136
           S TKVTFPLVWTNTCCSHPLYRESELIQ+N LGVRNAAQRKLLDELGI AEDVPVD+FTP
Sbjct: 124 SNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTP 183

Query: 137 LGRMLYKAPSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELIRKADAGE 196
           LGRMLYKAPSDGKWGEHELDYLLFIVRDVKV PNPDEVA++KYVSRE+LKEL++KADAGE
Sbjct: 184 LGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGE 243

Query: 197 EGLKLSPWFRLVVDNFLMGWWDHVEKGTLNEAVDMETIHKL 237
           EGLKLSPWFRLVVDNFLM WWDHVEKGTL EA+DM+TIHKL
Sbjct: 244 EGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284



>AT5G16440.1 | chr5:5371765-5373575 FORWARD LENGTH=292
          Length = 291

 Score =  414 bits (1065), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/221 (86%), Positives = 210/221 (95%)

Query: 17  QKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQR 76
           Q+RLMF+DECILVDE D VVGH++KYNCHLMEKIE+ENLLHRAFSVFLFNSKYELLLQQR
Sbjct: 71  QRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQR 130

Query: 77  SATKVTFPLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPVDQFTP 136
           S TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKL DELGI AEDVPVD+FTP
Sbjct: 131 SKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTP 190

Query: 137 LGRMLYKAPSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELIRKADAGE 196
           LGRMLYKAPSDGKWGEHE+DYLLFIVRDVK+ PNPDEVA++KYVSRE+LKEL++KADAG+
Sbjct: 191 LGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGD 250

Query: 197 EGLKLSPWFRLVVDNFLMGWWDHVEKGTLNEAVDMETIHKL 237
           E +KLSPWFRLVVDNFLM WWDHVEKGT+ EA DM+TIHKL
Sbjct: 251 EAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 291



>AT1G79690.1 | chr1:29985360-29990171 FORWARD LENGTH=773
          Length = 772

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 19/144 (13%)

Query: 57  HRAFSVFLF-NSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIQENYLGVRNAAQ 115
           HRA  V++F  +  +LLLQ RS  K ++P  W  +   H    ++ L+         +AQ
Sbjct: 32  HRAVHVWIFVETTQQLLLQLRSDDKDSWPGQWDISSAGHISAGDTSLL---------SAQ 82

Query: 116 RKLLDELGIPAEDVPVDQFTPLGRMLYK-APSDGKWGEHELD--YLLFIVRDVKV---VP 169
           R+L +ELG+    +P D F  +   L +   +DGK+  +E +  YL+ I+  + +     
Sbjct: 83  RELEEELGV---KLPKDAFEKIFVFLQECVTNDGKFINNEFNDVYLVTILHPIPLEAFTL 139

Query: 170 NPDEVADVKYVSREQLKELIRKAD 193
             +EV+ VKYV  E+ +  + K D
Sbjct: 140 QKEEVSAVKYVPYEEYRNFLSKED 163



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,000,687
Number of extensions: 211542
Number of successful extensions: 459
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 3
Length of query: 238
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 142
Effective length of database: 8,474,633
Effective search space: 1203397886
Effective search space used: 1203397886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)