Os05g0413400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Isopentenyl diphosphate isomerase 1.
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Os05g0413400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Isopentenyl diphosphate isomerase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.04 | 0.297 | 10.7 | -0.624 | 0.701 | 1.86 | -0.251 | 0.176 | -0.381 | 5.26 | 16.3 | 663 | -- | -- |
| 40.05 | 0.295 | 10.7 | -0.656 | 0.717 | 1.86 | -0.27 | -- | -0.39 | 5.23 | 16.4 | 649 | -- | -- |
| 40.16 | 0.295 | 10.7 | -0.603 | 0.712 | 1.86 | -- | 0.29 | -0.377 | 5.24 | 16.28 | 648 | -- | -- |
| 40.23 | 0.295 | 10.7 | -0.658 | 0.719 | 1.87 | -- | -- | -0.391 | 5.25 | 16.4 | 647 | -- | -- |
| 46.35 | 0.317 | 10.7 | -0.61 | -- | 1.74 | -- | 0.55 | -0.359 | -- | 15.82 | 1120 | -- | -- |
| 89.87 | 0.444 | 10.6 | -0.184 | 0.458 | -- | -0.322 | -- | -0.0844 | 2.38 | -- | -- | -- | -- |
| 90.23 | 0.445 | 10.6 | -0.175 | 0.456 | -- | -- | -- | -0.0823 | 2.24 | -- | -- | -- | -- |
| 46.02 | 0.316 | 10.7 | -0.689 | -- | 1.65 | -- | -- | -0.392 | -- | 16.7 | 1137 | -- | -- |
| 50.7 | 0.332 | 10.7 | -- | 0.716 | 1.72 | -- | -- | -0.318 | 4.83 | 15.68 | 590 | -- | -- |
| 102.62 | 0.473 | 10.6 | -0.156 | -- | -- | -- | -- | -0.0713 | -- | -- | -- | -- | -- |
| 91.04 | 0.446 | 10.6 | -- | 0.453 | -- | -- | -- | -0.0628 | 2.23 | -- | -- | -- | -- |
| 56.94 | 0.351 | 10.7 | -- | -- | 1.35 | -- | -- | -0.273 | -- | 17.4 | 1112 | -- | -- |
| 103.26 | 0.474 | 10.6 | -- | -- | -- | -- | -- | -0.054 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 41 | 40.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 44 | 40.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 45 | 40.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 48 | 40.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 53 | 40.39 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 64 | 40.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 116 | 41.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 124 | 41.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 138 | 41.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 144 | 41.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 21 |
| 169 | 41.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 223 | 42.08 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 243 | 42.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 244 | 42.16 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 296 | 42.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 304 | 42.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 309 | 42.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 315 | 42.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 334 | 42.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 346 | 42.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 602 | 43.02 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 992 | 43.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 993 | 43.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |