BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0413400 Os05g0413400|AK060336
(293 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02780.1 | chr3:602578-604648 REVERSE LENGTH=285 420 e-118
AT5G16440.1 | chr5:5371765-5373575 FORWARD LENGTH=292 416 e-117
AT1G79690.1 | chr1:29985360-29990171 FORWARD LENGTH=773 52 4e-07
>AT3G02780.1 | chr3:602578-604648 REVERSE LENGTH=285
Length = 284
Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/237 (82%), Positives = 220/237 (92%), Gaps = 2/237 (0%)
Query: 59 AGTA--EAADAGMDAVQQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAF 116
+GTA + DAGMDAVQ+RLMFEDECILVDE D V+GHDSKYNCHLME I + ++LHRAF
Sbjct: 48 SGTAMTDTKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAF 107
Query: 117 SVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFD 176
SVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+D +LGVRNAAQRKL D
Sbjct: 108 SVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLD 167
Query: 177 ELGIQAEELPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYV 236
ELGI AE++PVD+F PLGRMLYKAPSDGKWGEHELDYLLF+VRDV++ PNP+EVA++KYV
Sbjct: 168 ELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYV 227
Query: 237 NRDELKELLKKADAGEGGIKLSPWFRLVVDNFLMRWWDHVEQGTLEEAIDMKTIHKL 293
+R+ELKEL+KKADAGE G+KLSPWFRLVVDNFLM+WWDHVE+GTL EAIDMKTIHKL
Sbjct: 228 SREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284
>AT5G16440.1 | chr5:5371765-5373575 FORWARD LENGTH=292
Length = 291
Score = 416 bits (1070), Expect = e-117, Method: Compositional matrix adjust.
Identities = 190/232 (81%), Positives = 216/232 (93%)
Query: 62 AEAADAGMDAVQQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLF 121
++ DAGMDAVQ+RLMFEDECILVDE D V+GHD+KYNCHLMEKI + ++LHRAFSVFLF
Sbjct: 60 TDSNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLF 119
Query: 122 NSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFDELGIQ 181
NSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIE+ LGVRNAAQRKLFDELGI
Sbjct: 120 NSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIV 179
Query: 182 AEELPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYVNRDEL 241
AE++PVD+F PLGRMLYKAPSDGKWGEHE+DYLLF+VRDV+L PNP+EVA++KYV+R+EL
Sbjct: 180 AEDVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSREEL 239
Query: 242 KELLKKADAGEGGIKLSPWFRLVVDNFLMRWWDHVEQGTLEEAIDMKTIHKL 293
KEL+KKADAG+ +KLSPWFRLVVDNFLM+WWDHVE+GT+ EA DMKTIHKL
Sbjct: 240 KELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 291
>AT1G79690.1 | chr1:29985360-29990171 FORWARD LENGTH=773
Length = 772
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 19/144 (13%)
Query: 113 HRAFSVFLF-NSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQ 171
HRA V++F + +LLLQ RS K ++P W + H ++ L+ +AQ
Sbjct: 32 HRAVHVWIFVETTQQLLLQLRSDDKDSWPGQWDISSAGHISAGDTSLL---------SAQ 82
Query: 172 RKLFDELGIQAEELPVDQFIPLGRMLYK-APSDGKWGEHELD--YLLFMVRDVELSP--- 225
R+L +ELG++ LP D F + L + +DGK+ +E + YL+ ++ + L
Sbjct: 83 RELEEELGVK---LPKDAFEKIFVFLQECVTNDGKFINNEFNDVYLVTILHPIPLEAFTL 139
Query: 226 NPEEVADVKYVNRDELKELLKKAD 249
EEV+ VKYV +E + L K D
Sbjct: 140 QKEEVSAVKYVPYEEYRNFLSKED 163
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,533,384
Number of extensions: 232413
Number of successful extensions: 481
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 3
Length of query: 293
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,419,801
Effective search space: 1641861195
Effective search space used: 1641861195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)