BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0413400 Os05g0413400|AK060336
         (293 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0413400  Similar to Isopentenyl diphosphate isomerase 1      526   e-150
Os07g0546000  Similar to Isopentenyl pyrophosphate:dimethyll...   416   e-116

>Os05g0413400 Similar to Isopentenyl diphosphate isomerase 1
          Length = 293

 Score =  526 bits (1356), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 256/275 (93%), Positives = 256/275 (93%)

Query: 19  GLGVARSSARPRSPXXXXXXXXXXXXXXXXXXXTAAVMGKAGTAEAADAGMDAVQQRLMF 78
           GLGVARSSARPRSP                   TAAVMGKAGTAEAADAGMDAVQQRLMF
Sbjct: 19  GLGVARSSARPRSPFGRGLALRGLSSSSSSFAATAAVMGKAGTAEAADAGMDAVQQRLMF 78

Query: 79  EDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYELLLQQRSATKVT 138
           EDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYELLLQQRSATKVT
Sbjct: 79  EDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYELLLQQRSATKVT 138

Query: 139 FPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFDELGIQAEELPVDQFIPLGRMLY 198
           FPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFDELGIQAEELPVDQFIPLGRMLY
Sbjct: 139 FPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFDELGIQAEELPVDQFIPLGRMLY 198

Query: 199 KAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYVNRDELKELLKKADAGEGGIKLS 258
           KAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYVNRDELKELLKKADAGEGGIKLS
Sbjct: 199 KAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYVNRDELKELLKKADAGEGGIKLS 258

Query: 259 PWFRLVVDNFLMRWWDHVEQGTLEEAIDMKTIHKL 293
           PWFRLVVDNFLMRWWDHVEQGTLEEAIDMKTIHKL
Sbjct: 259 PWFRLVVDNFLMRWWDHVEQGTLEEAIDMKTIHKL 293



>Os07g0546000 Similar to Isopentenyl pyrophosphate:dimethyllallyl pyrophosphate
           isomerase (EC 5.3.3.2) (Fragment)
          Length = 238

 Score =  416 bits (1069), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/228 (84%), Positives = 216/228 (94%)

Query: 66  DAGMDAVQQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKY 125
           DAGMD VQ+RLMF+DECILVDEQDNV+GH+SKYNCHLMEKI S ++LHRAFSVFLFNSKY
Sbjct: 10  DAGMDEVQKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKY 69

Query: 126 ELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFDELGIQAEEL 185
           ELLLQQRSATKVTFPLVWTNTCCSHPLYRESELI++  LGVRNAAQRKL DELGI AE++
Sbjct: 70  ELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDV 129

Query: 186 PVDQFIPLGRMLYKAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYVNRDELKELL 245
           PVDQF PLGRMLYKAPSDGKWGEHELDYLLF+VRDV++ PNP+EVADVKYV+R++LKEL+
Sbjct: 130 PVDQFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELI 189

Query: 246 KKADAGEGGIKLSPWFRLVVDNFLMRWWDHVEQGTLEEAIDMKTIHKL 293
           +KADAGE G+KLSPWFRLVVDNFLM WWDHVE+GTL EA+DM+TIHKL
Sbjct: 190 RKADAGEEGLKLSPWFRLVVDNFLMGWWDHVEKGTLNEAVDMETIHKL 237



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,538,983
Number of extensions: 346547
Number of successful extensions: 839
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 193
Effective length of database: 11,814,401
Effective search space: 2280179393
Effective search space used: 2280179393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)