BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0543700 Os07g0543700|AK105710
(145 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0543700 Conserved hypothetical protein 168 1e-42
Os09g0563400 125 1e-29
Os01g0383500 86 1e-17
Os03g0430700 82 2e-16
Os04g0411650 77 5e-15
Os07g0546300 74 3e-14
Os02g0576000 72 1e-13
Os11g0541000 72 1e-13
Os03g0238401 70 8e-13
Os09g0477550 68 2e-12
Os02g0209750 Conserved hypothetical protein 67 3e-12
Os04g0514101 Conserved hypothetical protein 67 4e-12
Os02g0559650 E3 ubiquitin ligase EL5 (EC 6.3.2.-) 67 4e-12
Os08g0561800 Conserved hypothetical protein 65 2e-11
Os10g0540400 64 3e-11
>Os07g0543700 Conserved hypothetical protein
Length = 145
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/145 (64%), Positives = 94/145 (64%)
Query: 1 LAEGVGDGCIWPAWHRAVEGSETGLAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
LAEGVGDGCIWPAWHRAVEGSETGLAQ
Sbjct: 1 LAEGVGDGCIWPAWHRAVEGSETGLAQRSAADGSGGRLGARGAGGGDGGRLGARGAAGGG 60
Query: 61 XPDWREARPVEEXXXXXXXXXXXXXXXXXVRRSCRWVWRGLRRMKAGRRGTPVQGSHMSA 120
PDWREARPVEE VRRSCRWVWRGLRRMKAGRRGTPVQGSHMSA
Sbjct: 61 RPDWREARPVEEAGLAQRGAAGDGGGDLGVRRSCRWVWRGLRRMKAGRRGTPVQGSHMSA 120
Query: 121 KLVWWWSIGASDVVSQNLVCAPLLA 145
KLVWWWSIGASDVVSQNLVCAPLLA
Sbjct: 121 KLVWWWSIGASDVVSQNLVCAPLLA 145
>Os09g0563400
Length = 604
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 75/136 (55%)
Query: 1 LAEGVGDGCIWPAWHRAVEGSETGLAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
LAEGVGD IWPA HR VEGSETGLAQ
Sbjct: 464 LAEGVGDDYIWPARHRLVEGSETGLAQRSTADDIGDRLGARGAGGGDGGWLGAGGAADGG 523
Query: 61 XPDWREARPVEEXXXXXXXXXXXXXXXXXVRRSCRWVWRGLRRMKAGRRGTPVQGSHMSA 120
PDWREA VEE VRRSCRWVWRGLRR+K GRRG PVQGSHMSA
Sbjct: 524 RPDWREAHLVEEAGLAQSGAAGGGGGDLGVRRSCRWVWRGLRRIKTGRRGKPVQGSHMSA 583
Query: 121 KLVWWWSIGASDVVSQ 136
KLVWWWSIGAS V SQ
Sbjct: 584 KLVWWWSIGASGVDSQ 599
>Os01g0383500
Length = 135
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 50/72 (69%)
Query: 65 REARPVEEXXXXXXXXXXXXXXXXXVRRSCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVW 124
REARP+EE VRRSCRWVWRGLRR KA RRGT VQGSHMSA+LVW
Sbjct: 59 REARPMEEGRIGARGAAGSGGDNLDVRRSCRWVWRGLRRTKADRRGTLVQGSHMSAELVW 118
Query: 125 WWSIGASDVVSQ 136
WWS+GAS V SQ
Sbjct: 119 WWSLGASAVDSQ 130
>Os03g0430700
Length = 121
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 42/47 (89%)
Query: 90 VRRSCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGASDVVSQ 136
VRRSCRW+WRGLRR KAGRRGTPVQGSHM A+ VWWWSIGAS V SQ
Sbjct: 44 VRRSCRWMWRGLRRTKAGRRGTPVQGSHMLAEFVWWWSIGASAVDSQ 90
>Os04g0411650
Length = 110
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 42/50 (84%)
Query: 90 VRRSCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGASDVVSQNLV 139
VRRSCRW WRGLRR KAGR GTPVQGSH+SA+LVWWWSIG S V Q ++
Sbjct: 59 VRRSCRWAWRGLRRTKAGRWGTPVQGSHISAELVWWWSIGVSAVDLQVVI 108
>Os07g0546300
Length = 144
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 43/54 (79%), Gaps = 4/54 (7%)
Query: 90 VRRSCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGA----SDVVSQNLV 139
VRRSCRWVWRGLRR KA +RG PVQGS+MSA+LVWWWS GA S VVS N +
Sbjct: 83 VRRSCRWVWRGLRRSKASQRGMPVQGSYMSAELVWWWSFGALAVDSQVVSDNDI 136
>Os02g0576000
Length = 118
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 38/51 (74%)
Query: 90 VRRSCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGASDVVSQNLVC 140
VR S RWVWRGLR KAGRRG PV GSHMSA+L WWWSIGA V SQ C
Sbjct: 59 VRESYRWVWRGLRHTKAGRRGAPVLGSHMSAELEWWWSIGAPAVDSQEGGC 109
>Os11g0541000
Length = 281
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 36/44 (81%)
Query: 93 SCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGASDVVSQ 136
SCRWVWRGLRRMK GRR TPVQGS MSAKL WWSIGAS SQ
Sbjct: 59 SCRWVWRGLRRMKTGRRRTPVQGSRMSAKLERWWSIGASAKDSQ 102
>Os03g0238401
Length = 118
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 37/48 (77%)
Query: 90 VRRSCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGASDVVSQN 137
VR SCRWVWRGL R KAGRRG PV GSHMSA+L WWWSI A V SQ
Sbjct: 59 VRESCRWVWRGLWRTKAGRRGAPVLGSHMSAELEWWWSIEAPAVDSQE 106
>Os09g0477550
Length = 208
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 38/45 (84%)
Query: 92 RSCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGASDVVSQ 136
RSCRWVWRGL R KAGR+G+PVQGSHMSA+LVW WSI A V SQ
Sbjct: 103 RSCRWVWRGLWRTKAGRQGSPVQGSHMSAELVWRWSISALAVDSQ 147
>Os02g0209750 Conserved hypothetical protein
Length = 84
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 34/44 (77%)
Query: 93 SCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGASDVVSQ 136
SCRWVWRGLRR K GRRG VQG HMSA+ WWWSIG S V SQ
Sbjct: 36 SCRWVWRGLRRTKVGRRGASVQGPHMSAEFEWWWSIGTSSVDSQ 79
>Os04g0514101 Conserved hypothetical protein
Length = 107
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 36/45 (80%)
Query: 92 RSCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGASDVVSQ 136
RSC WVWRGLRR KA RR PVQGSHMSA++ WWWSIG VVSQ
Sbjct: 58 RSCWWVWRGLRRTKASRRRAPVQGSHMSAEVDWWWSIGVLAVVSQ 102
>Os02g0559650 E3 ubiquitin ligase EL5 (EC 6.3.2.-)
Length = 67
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 37/44 (84%)
Query: 93 SCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGASDVVSQ 136
SC+WVWRGL+ AGR+G PVQGSHMS+++ WWWSIGAS V SQ
Sbjct: 19 SCQWVWRGLQHTNAGRQGAPVQGSHMSSEVEWWWSIGASAVDSQ 62
>Os08g0561800 Conserved hypothetical protein
Length = 110
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 36/45 (80%)
Query: 92 RSCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGASDVVSQ 136
RSCRWVWRGL R K GR+GTPVQGSHMSA+LVW WSI A V Q
Sbjct: 61 RSCRWVWRGLWRTKIGRQGTPVQGSHMSAELVWRWSISALAVDLQ 105
>Os10g0540400
Length = 145
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 93 SCRWVWRGLRRMKAGRRGTPVQGSHMSAKLVWWWSIGAS--DVVSQNL 138
SCRWVWRGLRRMK G R TPVQG HMS +L WWSIGAS D++S L
Sbjct: 47 SCRWVWRGLRRMKTGWRRTPVQGPHMSVELQRWWSIGASAKDILSVFL 94
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,556,498
Number of extensions: 87068
Number of successful extensions: 307
Number of sequences better than 1.0e-10: 24
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 24
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)