Os07g0543700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0543700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.6 | 0.344 | 13.6 | 1.19 | 0.581 | -1.18 | 0.815 | 1.41 | 0.576 | 0.0119 | 21.99 | 16 | -- | -- |
| 54.98 | 0.348 | 13.6 | 0.942 | 0.588 | -1.08 | 0.52 | -- | 0.495 | 24 | 22.47 | 18 | -- | -- |
| 55.69 | 0.348 | 13.6 | 1 | 0.581 | -1.14 | -- | 0.393 | 0.511 | 23.8 | 22.46 | 18 | -- | -- |
| 55.81 | 0.348 | 13.6 | 0.936 | 0.582 | -1.12 | -- | -- | 0.501 | 23.8 | 22.53 | 15 | -- | -- |
| 71.61 | 0.394 | 13.6 | 1.19 | -- | -1.61 | -- | 0.934 | 0.629 | -- | 21.87 | 12 | -- | -- |
| 73.18 | 0.401 | 13.6 | 0.738 | 0.948 | -- | 0.749 | -- | 0.329 | 1.07 | -- | -- | -- | -- |
| 75.52 | 0.407 | 13.6 | 0.711 | 0.947 | -- | -- | -- | 0.325 | 1.06 | -- | -- | -- | -- |
| 72.21 | 0.396 | 13.6 | 1.05 | -- | -1.56 | -- | -- | 0.59 | -- | 21.63 | 11 | -- | -- |
| 77.02 | 0.411 | 13.6 | -- | 0.671 | -0.843 | -- | -- | 0.346 | 0.295 | 23.38 | 19 | -- | -- |
| 131.17 | 0.535 | 13.6 | 0.747 | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
| 88.86 | 0.441 | 13.7 | -- | 0.958 | -- | -- | -- | 0.246 | 1.09 | -- | -- | -- | -- |
| 98.46 | 0.462 | 13.6 | -- | -- | -1.36 | -- | -- | 0.396 | -- | 23.86 | 4 | -- | -- |
| 145.9 | 0.564 | 13.7 | -- | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 2 | 52.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 3 | 52.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 20 |
| 59 | 54.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 62 | 54.74 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 64 | 54.75 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 65 | 54.76 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 66 | 54.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 87 | 54.98 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 88 | 54.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 114 | 55.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 130 | 55.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 153 | 55.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 16 |
| 169 | 55.72 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 200 | 55.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 270 | 56.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 271 | 56.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 337 | 56.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 370 | 56.71 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 19 |
| 389 | 56.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 395 | 56.81 | temperature | 30 | 30 | < th | dose dependent | sin | 0 | NA |
| 398 | 56.81 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 399 | 56.82 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 16 |
| 434 | 56.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 442 | 56.96 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 447 | 56.97 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 542 | 57.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 14 |
| 588 | 57.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 604 | 57.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 625 | 57.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 638 | 57.46 | temperature | 25 | 1440 | > th | dose independent | sin | 16 | NA |
| 642 | 57.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 655 | 57.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 663 | 57.51 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 713 | 57.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 718 | 57.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 13 |
| 777 | 57.71 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 802 | 57.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 838 | 57.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 844 | 57.84 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 845 | 57.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 860 | 57.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 13 |
| 880 | 57.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 16 |
| 906 | 57.97 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 920 | 57.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |