Os08g0561800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0561800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.89 | 0.278 | 14.5 | 1.06 | 0.692 | -0.837 | 0.0855 | 0.0853 | 0.587 | 22 | 23.57 | 15 | -- | -- |
| 34.87 | 0.275 | 14.5 | 1.05 | 0.689 | -0.828 | 0.0751 | -- | 0.589 | 22.1 | 23.27 | 12 | -- | -- |
| 34.91 | 0.275 | 14.5 | 1.05 | 0.691 | -0.825 | -- | -0.000629 | 0.587 | 22.1 | 23.28 | 14 | -- | -- |
| 34.89 | 0.275 | 14.5 | 1.05 | 0.688 | -0.83 | -- | -- | 0.589 | 22.1 | 23.27 | 12 | -- | -- |
| 60.79 | 0.365 | 14.5 | 1.16 | -- | -1.15 | -- | 0.216 | 0.657 | -- | 22.01 | 8 | -- | -- |
| 45.54 | 0.316 | 14.5 | 0.906 | 0.855 | -- | 0.217 | -- | 0.469 | 23.5 | -- | -- | -- | -- |
| 45.74 | 0.317 | 14.5 | 0.897 | 0.854 | -- | -- | -- | 0.468 | 23.5 | -- | -- | -- | -- |
| 60.82 | 0.365 | 14.5 | 1.13 | -- | -1.13 | -- | -- | 0.648 | -- | 21.91 | 6 | -- | -- |
| 61.84 | 0.368 | 14.6 | -- | 0.737 | -0.574 | -- | -- | 0.414 | 22.7 | 24.6 | 10 | -- | -- |
| 91.48 | 0.447 | 14.5 | 0.92 | -- | -- | -- | -- | 0.478 | -- | -- | -- | -- | -- |
| 66.96 | 0.383 | 14.6 | -- | 0.864 | -- | -- | -- | 0.368 | 23.6 | -- | -- | -- | -- |
| 91.83 | 0.446 | 14.5 | -- | -- | -0.926 | -- | -- | 0.452 | -- | 24.4 | 3 | -- | -- |
| 113.82 | 0.498 | 14.6 | -- | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 3 | 33.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 30 | 34.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 39 | 35.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 43 | 35.12 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 20 |
| 48 | 35.15 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 74 | 35.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 103 | 35.41 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 150 | 35.54 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 162 | 35.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 169 | 35.64 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 170 | 35.64 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 198 | 35.73 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 19 |
| 272 | 35.86 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 291 | 35.89 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 326 | 35.96 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 373 | 36.08 | temperature | 30 | 720 | > th | dose dependent | sin | 6 | NA |
| 401 | 36.17 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 429 | 36.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 506 | 36.30 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 532 | 36.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 551 | 36.37 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 563 | 36.39 | temperature | 15 | 270 | > th | dose dependent | sin | 1 | NA |
| 579 | 36.42 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 586 | 36.44 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 20 |
| 632 | 36.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 708 | 36.56 | temperature | 15 | 10 | > th | dose dependent | sin | 23 | NA |
| 797 | 36.65 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 799 | 36.66 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 922 | 36.70 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 21 |
| 931 | 36.71 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 23 |
| 944 | 36.72 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 997 | 36.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |